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Thesis Info

Author

Sammar Abbas, Rizwan Ahmed

Supervisor

Azfar Shakeel

Department

Department of Computer Science

Program

BSE

Institute

COMSATS University Islamabad

Institute Type

Public

City

Islamabad

Province

Islamabad

Country

Pakistan

Thesis Completing Year

2018

Thesis Completion Status

Completed

Subject

Computer Science

Language

English

Added

2021-02-17 19:49:13

Modified

2023-01-06 19:20:37

ARI ID

1676720018970

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جس کو بھی جب بھی سہارا چاہیے

جس کو بھی، جب بھی سہارا چاہیے
پیار سے ہم کو پکارا چاہیے

میں بنوں یا تم بنو یا غیر ہو
شہر کو تو بس تماشا چاہیے

ڈوبنے والے کو میرے دوستو
ایک تنکے کا سہارا چاہیے

دیکھنے کی آس دل میں ہے جواں
وہ دکھائیں جو بھی دیکھا چاہیے

عاشقاں سب قتل ہو ہو مٹ گئے
اے ہوس! تجھ کو بھی کیا کیا چاہیے

تنگ ہوں جتنا تمھارے ہاتھ سے
زندگی کیا اور جینا چاہیے

ہے فضاؔ کچھ مضطرب تو کیا ہوا
شعر کہنے کو بھی قصہ چاہیے

اسلام میں اہلیت اجتہاد کا معیار

Ijtihad is not an ordinary matter, but an important and sensible religious responsibility from Sharia’h perspective. That is why, Islam does notpermits everyone to indulge in, rather imposes some pre-requisites of widespread knowledge, penetrating insight, intellectual wisdom and similar ext ra ordinary capabilities, without which Ijtihad is deemed as unacceptable and unauthentic. Similarly, any such so-called Ijtihad is also worthless which is not based on knowledge and argument. Several threats have been mentioned in Ahadith on such types of Ijtihad. However, acceptable and reward earning Ijtihad is one which is based on knowledge and arguments, fulfilling all pre-requisite conditions for the task. The essential conditions for indulging in Ijtihad are: expertise in Arabic language, deep understanding of Quran and Sunnah, knowledge of principles of Islamic jurisprudence especially analogy (Qayas), God-gifted intellect and wisdom, know- how about demands of contemporary age, knowledge about demanding situation for making Ijtihad, its procedure and about Shariah perspectives in this regard, and piousness. These conditions are agreed upon with consensus. Besides, there are some conditions which arouse difference of opinion, e.g. Knowledge of Usul-e-Deen, Logics, and particular problems of Islamic jurisprudence, etc. Some scholars consider them amongst essential conditions for Ijtihad, while rest majority do not deem them as necessary. Allama Shatibi, in his individual opinion contradicting to that of majority, has allowed for non-Muslims also to do Ijtihad. However, majority of scholars opine that Islam is the first pre-requisite condition for the task, hence non-Muslim is not capable for that.

Classification of G Protein-Coupled Receptors Using Machine Learning Techniques

G protein-coupled receptors (GPCRs) are located at the boundary of a cell, and are used for inter-cellular communications. They are mostly found in Eukaryotic cells; but can also be found in some Prokaryote cells. GPCRs modulate synaptic transmission in spinal cord and brain, and can trigger signaling pathways for the regulation of cell proliferation and gene expression. They are physiologically very important and according to an estimate, more than 50% of the marketed drugs target GPCRs. Computational prediction of unknown GPCRs has great importance in pharmacology because, malfunction of GPCRs can cause many diseases. The goal of this thesis is to propose new methods for the classification of GPCRs using Machine Learning approaches. The work in this thesis is divided into two parts. The first part is based on the classification of GPCRs using Machine Learning methods. We analyze biological, statistical, and transform-domain based feature extraction strategies and exploited various physiochemical properties to generate discriminate features of GPCR sequences. We have developed various GPCR classification methods. In the first method, GPCRs are predicted using the hybridization of pseudo amino acid composition and multi scale energy representation of physiochemical properties. In this method, our focus is on the introduction of various physiochemical properties (hydrophobicity, electronic and bulk property). In the second method, GPCRs are predicted using grey incidence degree measure and principal component analysis, whereby relation between various components of GPCR sequences is exploited. In the third method, we perform weighted ensemble classification of GPCRs using evolutionary information and multi-scale energy based features. The weights for each of the classifier are optimized using genetic algorithm, which provides an improvement in classification performance. Second part of the thesis is based on multiple sequence alignment of GPCRs, whereby, we utilize the structural information of GPCRs. The three-dimensional structures of several Rhodopsin like GPCRs have been resolved at atomic resolution and validates the prediction using sequence information alone that GPCRs fold has a bundle of seven transmembrane helices (TMs). The dataset is aligned initially using multiple sequence alignment methods and TMs are extracted. The dataset is composed of 19 sub families of Rhodopsin receptors, belonging to 62 species. Weights are assigned to avoid bias for a particular specie. Position specific scoring matrices (PSSM) are computed for the seven TMs data and pseudo counts are added. Pseudo 2counts are added using conventional Blosum62 scoring matrix. The unknown receptors are classified using PSSMs of the known receptors and by the TM similarity methods. Our research may have valuable contributions in the fields of Bioinformatics, Pattern Classification, and Computational Biology, and has yielded comparable results with the existing approaches. We conclude that our research may help the researchers in further exploring membrane protein classification or any other sub cellular localization classification.