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Interactive Visual Tools for Multiple Sequence Alignment Versions 2. 0

Thesis Info

Access Option

External Link

Author

Muhammad Ashfaq

Institute

Virtual University of Pakistan

Institute Type

Public

City

Lahore

Province

Punjab

Country

Pakistan

Thesis Completing Year

2017

Thesis Completion Status

Completed

Subject

Software Engineering

Language

English

Link

http://vspace.vu.edu.pk/detail.aspx?id=105

Added

2021-02-17 19:49:13

Modified

2024-03-24 20:25:49

ARI ID

1676720968125

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IVisTMSA Version 2.0 (Interactive Visual Tools for Multiple Sequence Alignments Version 2.0) is visual tool in support of control, analysis, editing as well as annotation of several sequence association. The proposed version offers several analysis and editing features. Firstly, it shows sequence annotation in graphical form such as tooltips to show certain information, highlighting matches, mismatches, gaps and Highlight significant sequence place of residues phosphorylated/glycosylated. Secondly, it allows the user to lock sequences for synchronized hand alignment adjustments and prevent accidental edits. Thirdly, it also permits the user to calculate protein hydrophobicity / hydrophilicity plot. Fourthly, show chart view in sequences and alignment wise. Fifthly, it also allows the user to import of compatible formats directly from the clipboard without saving to a file first. Other features include downloading sequences from EMBL/GenBank/UniProt. IVisTMSA Version 2.0 has been developed using Java programing language and Netbeans IDE 8.0.
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آزادی ایک انمول نعمت ہے

آزادی ایک انمول نعمت ہے
نحمدہ ونصلی علی رسولہ الکریم امّا بعد فاعوذ بااللہ من الشیطن الرجیم
بسم اللہ الرحمن الرحیم
پڑی وطن کو ضرورت اگر تو ہم دیں گے
لہو کا تیل چراغوں میں روشنی کے لیے
صدر ِفطین، اساتذہ متین اور سامعین باتمکین السلام علیکم! میں آج جس موضوع پر لب کشائی کی جسارت کرنے جارہا ہوں، اس کا عنوان ہے:’’آزادی ایک انمول نعمت ہے‘‘
ہم نے سوکھی ہوئی شاخوں پہ لہو چھڑکا تھا
پھول اگر اب بھی نہ کھلتے تو قیامت کرتے
صدرِذی وقار!
آزادی خدا کی بہت بڑی نعمت ہے اور اس نعمت کا شکر ادا کرنا سب سے بڑی سعادت ہے۔ شکر در اصل نعمت کی فراوانی کا سبب ہوا کرتا ہے اور کفران نعمت، نعمت کے زوال کا باعث بنتا ہے۔
سامعین محترم!
آیئے ! آج ہم اپنے گریبان میں منہ ڈال کر جھانکیں کہ ہم نے آزادی کی نعمت کا کس حد تک شکر ادا کیا ہے اور خدا اور مخلوقِ خدا سے جو وعدے کیے تھے، انہیں کہاں تک پورا کیا ہے؟
صدرِذی وقار!
ہم نے نعرہ لگایا تھا کہ’’ ہم پاکستان میں قرآن کا قانون جاری کریں گے۔نبی کریمؐ کی سنت کی روشنی میں زندگی کا سفر طے کریں گے، نیکی کا علم بلند کریں گے اور بدی کو سرنگوں کرکے چھوڑیں گے، گناہوں کی اندھیری رات میں نیکی کے دیئے جلائیں گے اور شب تیرہ کی تیرگی کا جنازہ نکال کر دم لیں گے۔ جبر واستبدادکی کالی گھٹائیں چھٹ جائیںگی ، عدل و انصاف کا قاضی محمود و ایاز کو ایک صف میں کھڑا کر دے گا، غربت کے مہیب سائے رخصت ہو جائیں گے، تنگدستی اورمحتاجی کے عفریت کو منہ کی کھانی پڑے گی ، خوشحالی کا آفتاب طلوع ہوگا اور افلاس زدہ انسان امن و عافیت کے گہوارے میں خوشی کے نغمے گاتے...

Discovery Learning Effect on Mathemathic Learning

This study aimed to improve the mathematics learning through the application of the Discovery Learning model with a scientific approach. The application of the Discovery Learning learning model with an effective scientific approach can increase the frequency of activeness and activities in the teaching and learning process according to the observations of student attitudes during the implementation of classroom action research. It showed that Student learning outcomes that are not entirely satisfactory are also caused by several factors, namely individual student factors, student environment and school environment.

Yield Response of Tomato to Water Stress and Nitrogen Doses under Drip Irrigation

Tomato is one of the most demanding crops in terms of water and fertilizer inputs. To meet irrigation water demand, growers use surface and ground water resources. These resources are in decline. Realizing the importance of water, tomato yield under deficit irrigation regimes, and different Nitrogen (N) levels, was studied during 2015 and 2016 at the research farm of the University of Agriculture Peshawar, Pakistan, using factorial arrangement of randomized complete block design (RCBD). These factors were four irrigation levels; full irrigation (I0), 15% deficit (I15), 30% deficit (I30) and 45% deficit (I45); and four nitrogen doses;100% of recommended dose (120 kg ha-1) (N100), 85% of recommended dose (N85), 70% of recommended dose (N70) and 55% of recommended dose (N55). Frequency Domain Reflectometry (FDR) was used for soil moisture monitoring. Io was based on 30% of management allowed deficit. Current study results indicated that deficit irrigation (I15, I30 and I45) had significant effect (P<0.05) on plant height, number of fruits per plant, leaf area index (LAI), total yield, marketable yield, water productivity, nitrogen uptake, Potash uptake (K) and Nitrogen use efficiency (NUE). Compared to I45, full irrigation enhanced, number of fruits per plant, LAI, total yield, marketable yield, N uptake, K uptake and NUE by 34, 30, 24, 25, 13, 15.5 and 24%, respectively. Water productivity was 25.8% higher for I45 compared to I0. Effect of deficit irrigation on dry-to-fresh weight ratio, days to 50% flowering, individual fruit weight and Phosphorous (P) uptake was found to be non-significant. Effect of Nitrogen doses number of fruits per plant, LAI, total yield and NUE was found to be highly significant. However, the effect on dry-to-fresh weight ratio, plant height, days to 50% flowering, individual fruit weight, marketable yield, water productivity and NPK uptake were found to be non-significant. Maximum dry-to-fresh weight ratio (0.83) was recorded for N70, maximum plant height (77.7 cm) was obtained under N85, maximum number of days to 50% flowering (42.3) were recorded for N100, highest individual fruit weight (66.6 g) was obtained in N85, while P uptake (10.2 kg ha- 1) was obtained in N85 and maximum NUE (414) was recorded for N55. Recommended dose of Nitrogen (N100) enhanced number of fruits per plant (12.6%), LAI (22.8%), total yield (8%), marketable yield (6.9%), water productivity (6.3%), N (5.3%) and K uptake (9.8%) compared to N55. Deficit irrigation increased the risk of fruit damage in tomato plants. Water productivity decreased with increasing irrigation levels. Nitrogen and potash uptake were increased with increasing irrigation levels, while phosphorous uptake was not significantly affected. Increasing irrigation and Nitrogen doses increased the risk of nitrate leaching beyond the root zone, making it unavailable for plant uptake. Full irrigation and Nitrogen (120 kg ha-1) is recommended for higher total yields, however, 45% less nitrogen can be applied through a drip irrigation system without compromising marketable yield. In areas where water is a scarce commodity, highest water productivity can be achieved with 45% deficit irrigation. Simulation of Nitrate leaching with HYDRUS-1D showed that with decreased irrigation levels below field capacity, and with the recommended dose of Nitrogen, nitrate leaching was higher than with reduced Nitrogen doses and full irrigation. Increasing irrigation levels above field capacity with recommended dose of Nitrogen showed higher nitrate leaching than increasing Nitrogen doses above recommended dose of Nitrogen and full irrigation. HYDRUS-1D can be efficiently used for nitrate leaching simulation.