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Home > Chloroplast Genome Sequencing of Ajuga Bracteosa and its Phylogenetic Relationship in Familylamiaceae

Chloroplast Genome Sequencing of Ajuga Bracteosa and its Phylogenetic Relationship in Familylamiaceae

Thesis Info

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External Link

Author

Nosheela Riaz

Institute

Virtual University of Pakistan

Institute Type

Public

City

Lahore

Province

Punjab

Country

Pakistan

Thesis Completing Year

2019

Thesis Completion Status

Completed

Subject

Software Engineering

Language

English

Link

http://vspace.vu.edu.pk/detail.aspx?id=370

Added

2021-02-17 19:49:13

Modified

2024-03-24 20:25:49

ARI ID

1676721036077

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Medicinal plants were playing an important role in our lives due to their remedial properties. Lifesaving medicines were produced by these plants. For their better use in food and medicines genomes sequencing of these medicinal plants was needed. Ajuga bracteosa is a medicinal plant in family Lamiaceae (mint family). It is a herbal plant and used in many medicines. In this research work chloroplast genome sequencing of Ajuga bracteosa was carried out by next generation sequencing technique. DNeasy plant DNA extraction kit was used for the extraction of DNA from fresh young leaves of Ajuga bracteosa. Quality and quantity of DNA was evaluated using agarose gel electrophoresis and uDrop plate of Multiskan GO spectrophotometer. DNA was lyophilized before shipment to Novagene, Hong Kong, a commercial NGS facility. Sequencing was done using Illumina HiSeq 2500 instrument, using PE150 run, and approx. 4Gb data was produced. Quality of short reads was checked using SolexaQA tool. Short reads were mapped back to Ajuga reptans chloroplast genome downloaded from NCBI. Mapping was visualized using Tablet tool, which attested to high coverage depth of chloroplast genome. The genome was de novo assembled using Velvet tool, and several velvet runs were performed by changing kmer values. Assembled contigs from these Velvet runs were imported in Geneious tool and used to generate full length chloroplast genome. The assembled genome size was 150,373 bp, divided in usual LSC, SSC and IRs. Overall genome structure and gene synteny matched to Ajuga reptans chloroplast genome. Phylogenetic analysis showed divergence of Ajuga bracteosa from its relatives in family Lamiaceae. This study showed intra specific and interspecific relationship within family Lamiaceae. So, this work will help the researchers in proper identification and differentiation of Ajuga bracteosa from the other plants of same family.
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۔غزل

غزل۔۔۔قاضی اعجاز محور

خاک ہوں آسماں پہ پہنچا دے
میں مرا ہوں تری محبت میں
پیار تو ایک عام سی شے ہے
بن کے جگنو مجھے دکھا رستہ
میں تجھے دیکھ کر غزل لکھوں

 

عشق کا عین مجھ کو پڑھا دے
دل کے آنگن میں مجھ کو دفنا دے
اپنی نفرت کا مجھ کو تحفہ دے
اور رستے سے مجھ کو بھٹکا دے
ایک بوسے کا طرحی مصرعہ دے

Comparative Analysis of Islamic Banking Products in Pakistan and Malaysia

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Modified Optical Properties of Au Embedded Wide Band Gap Semiconductor Thin Films and Nanostructures

Wide bandgap semiconductors provide efficient absorption in UV and very low absorptions in the visible range of the electromagnetic spectrum. This limits their effectiveness in photocatalytic, photoactive and photosensitive devices. However, the optical properties of these semiconductors can be enhanced to provide increased absorptions in the visible range. The bandgap of the semiconductor can be modulated in several ways that include: doping, formation of heterostructures, quantum dots coupling, addition of metallic nanoparticles etc. In the present work, the surface plasmon resonance (SPR) energy of Au is utilized in three different semiconductor morphologies to tune the optical characteristics. Studies with three different dielectric environments such as: Au embedded planar, non-planar and Au coated wide bandgap semiconductors were performed. Specific studies of metal sandwiched planar (TiO2/Au/TiO2), heterostructure (ZnO/Au/TiO2) and Au coated ZnS nanostructures using various optical techniques that included spectroscopic ellipsometry, UV/Vis absorption and photoluminescence spectroscopy (PL) were performed in this work. The UV/Vis absorptions of TiO2/Au/TiO2 revealed the presence of two broad bands in the visible range, that were absent in TiO2 thin film, for both as-grown and annealed samples. This was attributed due to improved interband and plasmon resonance oscillations of Au in a dielectric environment. Spectroscopic ellipsometry of the Au, TiO2 and composite TiO2/Au/TiO2 films indicated that they carried the cumulative effect of UV and visible absorptions due to SPR phenomenon. The presence of interband transition was confirmed by fitting the experiment with the theoretical models, Tauc Lorentz model and Drude Lorentz model for TiO2 and Au, respectively. Dielectric functions obtained from ellipsometry were combined for the sandwiched structure using effective medium approximation (EMA) methods. The modelling showed the presence of interband transitions which provide improved absorption at Au/TiO2 interface. The values of Urbach energy which corresponds to TiO2 band tails extended into the visible region was also estimated. The increase in Urbach energy was xi a direct consequence of coupling of plasmons with the defect induced TiO2 band tail widened into the visible range. The effect of metal nanoparticles was observed in ZnO/Au/TiO2 nanoheterostructures in UV/Vis absorption and PL spectroscopy. The Au content embedded in the ZnO/Au/TiO2 composite was varied from 2-10 nm. It was observed that maximum absorptions in the structure occurred when Au content was varied to 6 nm (corresponding to the diameter of 9.8 ± 3.5 nm and density 1.4 x 1011 cm-2).Photoluminescence spectroscopy also revealed the maximum pinning of the defect states in TiO2 interface at 6 nm due to maximum participation of hot electrons injected through the SPR phenomenon. This study also highlighted the importance of dielectric layer and thickness surrounding the NPs as it affected the spread of Au NPs SPs resonant field. The third study comprised of the temperature dependent photoluminescence of ZnS nanostructures doped with two different elements, Mn and Sn. The defect centres in ZnS nanostructures provide very high luminescence. The coupling of these luminescent centres with the Au NPs altered the luminescence dynamics by introducing new charge transfer paths. In the present study, the overlapping of the Mn-induced defects with the SPR peak of Au resulted in quenching of UV peak corresponding to donor-acceptor transitions. While the Mn-induced defect overlapping the Au plasmon field was still present. Likewise, the presence of Au not only affected the defect-based transitions due to different ionic species in Sn-doped ZnS nanostructures but also activated the resonant processes in Sn, which is a semi-metal itself.