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Mapping of New Locus in Deafness

Thesis Info

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Author

Zahra, Sana

Program

PhD

Institute

University of the Punjab

City

Lahore

Province

Punjab

Country

Pakistan

Thesis Completing Year

2018

Thesis Completion Status

Completed

Subject

Molecular Biology

Language

English

Link

http://prr.hec.gov.pk/jspui/bitstream/123456789/12678/1/Sana%20Zahra_Molecular%20Bio_2018_UoPunjab_PRR.pdf

Added

2021-02-17 19:49:13

Modified

2024-03-24 20:25:49

ARI ID

1676726613262

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Deafness is the most prevalent disorder with 1 in every 500 of world population has disabled hearing loss. Deafness may occur in non-syndromic or syndromic form. Non-syndromic deafness accounts for 70% while remaining 30% accounts for syndromic deafness. Although deafness is prevalent worldwide but determination of causative genes is difficult due to genetic heterogeneity and limited genotype phenotype correlation of deafness related genes. An extensive research on deafness in the last two decades has paved remarkable progress in the detection of deafness related genes. In terms of nonsyndromic recessive hearing loss, the chromosomal locations are presently identified for ~102 loci recessive deafness, elucidating role of 63 genes having causative role in deafness. As nearly 300 genes are involved in hearing cascade a need of further study is the requirement for current study of deafness genetically. The present study was intended to ascertain the molecular basis of deafness expressed at different audiometric levels by making use of linkage analysis as a genetic tool. To attain the objective, Thirty five families with non-syndromic and syndromic phenotype segregating with autosomal recessive mode of inheritance were enrolled, after collection of blood samples DNA was extracted and linkage analysis was done for already reported autosomal recessive deafness loci. In eleven families having syndromic phenotype, four families showed linkage to Usher Syndrome Type 1D, three families showed linkage to Usher Syndrome Type 1F and one family was found linked to Usher Syndrome Type 2C whereas remaining three were found linked to DFNB4/PDS locus. All three Pendred syndrome linked families showed similar pattern of haplotype with DFNB4 Short Tandem Repeats markers. Interestingly on mutational analysis p.Y556C mutation was found in all affected individuals this finding outline this mutation as founder mutation in Punjabi ethnicity of Pakistani population mutation spectrum. In Five families with non- syndromic phenotype, one family was found linked to DFNB49 locus whereas four families were found linked to DFNB8/10, DFNB4, DFNB21 and DFNB7/11 loci. Sequence analysis of these linked families identified two reported mutations one c.1219T>C; p.C407R in TMPRSS3 gene (DFNB8/10) and other c.71G>T; p.R24L in SLC26A4 gene (DFNB4) whereas one novel mutation c.1247_1248delGG; p.G416Dfs*24 in TECTA gene (DFNB21) and a novel compound heterozygous mutation c.1259G>A; p.C420Y and c.1788C>A; p.S596R in TMC1 gene (DFNB7/11) was found. The genome scan of the family PKDF1629 having syndromic phenotype outlines a new recessive deafness locus hint at chromosome 6 position q23.3-25.2 with a critical linkage interval of 19.2Mb. This novel discovery will assist in better understanding of genetics involved in syndrome associated with deafness and will pave way for their diagnosis, treatment and eventually their control.
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ڈگدا ڈھاندا اٹھدا بہندا

ڈگدا ڈھاندا اٹھدا بہندا
در تیرے تے ٹھڈے کھاندا
تیرا در ہے خانہ کعبہ
نت طواف کرن نوں جاندا
ہکو سک ملن دی دل وچ
نہ کجھ پیندا نہ کجھ کھاندا
چار چوفیرے غم دے گھیرے
ہجر فراق دلے نوں کھاندا
موت تے زندگی دو حرف نیں
ہک ساہ آندا، ہک ساہ جاندا

لکھ درود سلام نبیؐ تے
روز محشر امت بخشاندا
اوہندے چار چوفیرے برکت
رحمت دا دریا بہاندا
حب شراب نبیؐ دی مینوں
لوکاں وچ میخوار سداندا
جیہڑا یار دا ہو کے رہندا
آخر کار اوہ رتبے پاندا
حج دا رتبہ اوہنوں ملسی
دکھیاں نوں جو گل نال لاندا
آخر سکھ ملن گے اس نوں
جیہڑا پنڈ دکھاں دی چاندا
سک حنیف ملن دی رہ گئی
کدی تاں سد کے کول بٹھاندا

Novel Bioactive Compound Production by Microbial Biota: Potential Antimicrobials Potential antimicrobials produced by microbial biota

Man is always trying to make his life easier and accomplished. He has faced mass destruction in history due to epidemics like small pox, malaria and plague. In order to combat diseases, exploration of man led him to search for causative agents and their control. A time reached when it was found that microbes are themselves a source of potent metabolites which have proved to be effective as drugs and medicines showing great antibiotic activity. It is necessary to find out new sources for potential new antimicrobial compounds. Several hundred important compounds have been isolated which have antibiotic activities and diverse chemical nature. But these compounds should have minimum toxicity to be useful clinically. Because of the increasing resistance of pathogens, there was a never ending desire and need to search for more. Bioactive Compounds have been extracted from microbes which are produced as secondary metabolites. Day by day, new compounds are being discovered giving a hope of golden future of drug industry. The current article emphasizes the importance and need to search for new bioactive compoundsto overcome infections caused by multiple drug resistant (MDR) and biofilm forming pathogens irrespective of the previously present knowledge. 

Isolation and Characterization of Cytolytic Protein Gene from Local Isolates of Bacillus Thuringiensis

Chemical insecticides are widely used to control the insects, these insecticides are not environmentally healthy as they are not biodegradeable and hence are biomagnified. These insecticides are also not host specific; they also kill the beneficial insects. So there is a need to search for a control agent which should not harm the environment and also to human beings. Several different methods have been used in recent past to control the insects which include use of pheromones for trapping or disruption of mating behavior, insect growth regulators that interfere with larval development, parasitoids, fungi, viruses and bacteria, which debilitate or cause death in the infected insect. One of the most successful biological control organisms is a naturally occurring bacterial pathogen, Bacillus thuringiensis generally known as B.t. Formulations based on B.t. have been used for decades as biological insecticides for agriculture and forestry, as well as for vector control against mosquitoes and black flies. Interest in B.t. proteins has increased during the last two decades because of their unique qualities which are unmatched by any conventional insecticide. Of the 297 genes known to encode B.t. proteins, some share a high degree of homology, while others have diverse nucleotide sequences. Because of the interest in B.t., the list of new B.t. subspecies is growing as is the group of economically important target insects. B.t. produces crystal proteins during sporulation. These crystal proteins are of two types Cry and Cyt. Both of these types of proteins are different in their mode of action. Cytolytic proteins have an additional property of having cytolytic activity against different cells and also against mammalian erythrocytes. These proteins especially Cyt proteins are active against mosquito larvae. Recent studies reported the development of resistance in mosquitoes against Cry toxins. Researchers tried different methods to overcome this resistance and they found that when Cyt proteins are used in combination with Cry proteins they greatly reduced the resistance of mosquitoes against B.t. toxins. This indicated that Cyt proteins work synergistically with Cry proteins. In the present study, soil samples collected from different areas of Lahore, Kasur and Faisalabad. A total of 50 soil samples were collected, these soils were rich in organic manure. B.t. like bacteria were isolated from these soil samples using differential medium containing sodium acetate buffer. These isolates were then subjected to biochemical characterization by performing biochemical tests. The expected B.t. like isolates were screened for the presence of cyt genes. After confirmation of presence of cyt 2B gene, mosquitocidal activity of these isolates were checked by using B.t. spores and total B.t. cell proteins against 3rd instar larvae. From the bioassays, it was found that NB B.t.4 was found to be most toxic with LC50 value of 400±1.15 μg/ml and 68±0.46 μg/ml for its spores and total cell protein, respectively. After bioassays, six most toxic B.t. isolates were then selected for further study. Ribotyping of these isolates was done to amplifying 16S rRNA gene to identify these isolates. Protein profile of these isolates was checked to confirm the presence of 29 kDa protein band. Full length cyt 2B gene was amplified, cloned in pTZ57RT cloning vector, and pET22b vector was used for expression. IPTG induction of 1 mM was found good for expression ranging incubation time of 4-6 hours. Expressed protein was then purified by anion exchange chromatography. Bioassays were performed using recombinant organism (E. coli transformed with cyt 2B gene), expressed crude protein and purified protein. It was found that the purified protein was most toxic with LC50 Value of 50±1.68 μg/ml.