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Home > Molecular and Genetic Basis of Intellectual Disability in Pakistani Population

Molecular and Genetic Basis of Intellectual Disability in Pakistani Population

Thesis Info

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Author

Hussain, Mureed

Program

PhD

Institute

University of the Punjab

City

Lahore

Province

Punjab

Country

Pakistan

Thesis Completing Year

2018

Thesis Completion Status

Completed

Subject

Molecular Biology

Language

English

Link

http://prr.hec.gov.pk/jspui/bitstream/123456789/12793/1/Mureed%20Hussain_molecular%20Bio_2018_UoPunjab_PRR.pdf

Added

2021-02-17 19:49:13

Modified

2024-03-24 20:25:49

ARI ID

1676726674454

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Intellectually disability is a genetically heterogeneous disorder that results due to impairment in development of nervous system. Intellectual disability is characterized by an IQ level below 70 and limitation in adaptive behaviors. Prevalence of intellectual disability is estimated 2-3% worldwide. In Pakistani population, prevalence of intellectual disability is higher than the average. Numerous factors contribute to the elevated prevalence. These include poor nutrition, deprived social-economic conditions, birth defects, and consanguinity. Genetic factors contributing to intellectual disability have not been studied comprehensively in Pakistani population. The present project was conducted at the Genetic Diseases Laboratory, Center of Excellence in Molecular Biology (CEMB), Lahore. The aim of study was to uncover genetic determinants of intellectual disability in local population. Thirty two families with multiple intellectually disabled patients are enrolled from various cities. Genetic analysis of these families to determine causative genetic variations, homozygosity mapping and next generation sequencing was performed. The results were further verified by in-silico tools and Sanger sequencing. Two families designated PKMR198 and PKMR 216 showed linkage to MRT23 and MRT9 respectively. Two families, PKMR 205 and PKMR 213, showed novel linkage at chromosome 13 and chromosome 1 respectively. Exome sequencing was utilized to find pathogenic DNA changes that have potential to cause intellectual disability. In three families recurrent mutations were found in reported genes for intellectual ability. PKMR29 showed segregation of recurrent mutation c.881A>G in POMT2. PKMR115 presented mutation c.57G>A in SRD5A3. In PKMR184, recurrent mutation c.5769delT was present in SPG11. Novel pathogenic variations were found in ten genes known to be involved in intellectual disability. These pathogenic variations were homozygous in affected individuals. In five families PKMR85, PKMR99, PKMR119, PKMR193 and PKMR133 novel pathogenic missense variations in MED23_c.506A>G, SYNE1_c.939G>C, PGAP1_c.2276A>G, ARL13B_c.599G>A and DOCK8_c.295G>A were segregated with intellectual disability respectively. In another three families PKMR79, PKMR212 and PKMR224 novel disease causing frameshifts variants AP4M1_c.1287delG, ZFYVE26_c.1630_1631delTC and MKKS_c.775delA showed segregation with intellectual disability respectively. One family PKMR102 segregates stop gain variation ASPM_c.3977G>A with microcephaly. A canonical splice site variation AP4S1_c.139-2A>G at splice acceptor site was found segregating with disease phenotype in family PKMR216. In addition, the results revealed pathogenic genetic variations in nine novel candidate genes. In four families PKMR153 PKMR174, PKMR195 and PKMR213 missense damaging variations GPAA1_c.527G>C, MEGF9_c.686G>A, WFDC1_c.634G>A and TMEM222_c.214G>A were segregated with the neurologic impairment. In four families PKMR64, PKMR200, PKMR206 and PKMR215 novel truncating disease causing variations CAPN12_c.658_659delAA, UBE2J2_c.77_78delAA, CCDC82_c.373delG and PUS7_c.89_90delCA showed segregation respectively. In PKMR72 a silent and splice site variation of MDGA2 (c.2232A>G) is segregating. All known and novel pathogenic variations were homozygous in intellectually disable patients and segregate with autosomal recessive inheritance. These findings further expand the existing repertoire of genes involved in ARID.
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نعت در نعت ہے سلسلہ نعت کا

نعت در نعت ہے سلسلہ نعت کا
کیا عجب ذائقہ شعر کا ، نعت کا

نعت لکھتے ہوئے اک جھجک سی رہی
گو ارادہ کیا بارہا نعت کا

دولتِ دو جہاں مل گئی ہے مجھے
اک خزانہ ملا بے بہا نعت کا

سطرِ عنوان ِ نعت آپ ؐ کی ذات ہے
سیرتِ مصطفیٰؐ حاشیہ نعت کا

یہ تو سرکارؐ کی ہے نگاہِ کرم
ورنہ کس کو تھا یاں حوصلہ نعت کا

نعت کا ذکر ہو ، نعت کی بات ہو
دل کو بس بھا گیا تذکرہ نعت کا

تیرگی چھٹ گئی، مجھ کو اب مل گیا
جگنوؤں سے بھرا راستہ نعت کا

The Risk of Developing Central Line-Associated Bloodstream Infections in Integrated Health Care System of Pakistan-A Meta-Analysis

Studies regarding the prevalence of CLABSIs in Pakistan are limited. However, it is known that healthcare-associated infections are a concern in many low- and middle-income countries, including Pakistan. The present study is aimed to identify the relative risk of developing CLABSIs in the hospital care setups of Pakistan. The risk of biases in included studies was assessed using Cochrane tool parameters. Analysis of results revealed a relative risk of getting CLABSIs is 1.78 (p<0.001) among patients admitted in the hospitals for greater than 72 hours. This shows that the chances of getting infected at the central line site were more than 50% among patients admitted to ICUs in Pakistan. It has been concluded that the relative risk of CLABSIs in the integrated healthcare system of Pakistan is high.   DOI: https: //doi. Org/10.59564/amrj/01.01/003  

Investigation of Oxidative Stress Enzymes and Histological Alterations in Liver, Spleen, and Heart of Tilapia Exposed to Chlorpyrifos

Chlorpyrifos (ChF) is widely used in agricultural fields and indoor for controlling pests. It sinks in the aquatic sediments and pose toxicity for aquatic organisms including fish. Therefore, the current study was designed to investigate the oxidative stress enzymes, and histological alterations in the liver, spleen, and heart of tilapia (Oreochromis niloticus) due to ChF exposure. Median lethal concentration (LC50 24 H) was calculated as 52.78 ?g/l by exposing fish with different acute concentrations (0, 1, 15, 35, 40, 45, 50, 55, 100 and 150 ?g/l) of ChF. For assessment of sublethal toxicity of ChF, the fish were divided into four groups, one group served as control (C) while three groups (ChF1, ChF2, ChF3,) were exposed to three sublethal doses of ChF. ChF1 group was treated with 3.51 ?g/l (1/15th of LC50) of ChF whereas, ChF2 and ChF3 groups were treated with 5.27 ?g/l (1/10th of LC50) and 10.55 ?g/l (1/5th of LC50) of ChF respectively for 14 days and oxidative stress enzymes, biochemical parameters, behavioral changes and histological alterations were evaluated. It was found that level of Glutathione-S-Transferase (GST), Catalase (CAT), and Superoxide dismutase (SOD) increased significantly (p=0.05) in the gills and liver of tilapia treated with sublethal concentrations of ChF. Study of morphological features exposed that fish in the control groupshowed significantly increase in weight and length (p=0.05) as compared to ChF treated fish. The behavioral changes as reduced feeding rate, eratic swimming, increased surface gulping, aggregation in the corner of tank, hemorrhage, and darkening of skin coloration was observed in all ChF treated groups. The significant elevation in level of aspartate aminotransferase (AST) and alanine aminotransferase (ALT) was observed in all groups treated with different sublethal concentrations of ChF. Histological study of liver tissues shown increased number of kupffer cells, hydropic degeneration, dilated sinusoids, congestion, necrosis, and hemorrhage in liver of fish from all treatment groups. In the spleen of fish exposed to ChF increased number of melanomacrophage centres (MMCs), necrosis, congestion, and hemorrhage was detected. Disorganized muscle fibers, cardiac muscle fiber degeneration, coagulative necrosis, congestion in blood vessel and necrosis was perceived in the heart of ChF treated fish. This study concluded that sublethal concentrations of ChF can induce oxidative stress and histological alterations in the tissues of tilapia.