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Optimization of Conditions for the Folding and Bioprocessing of Different Derivatives of Human Insulin

Thesis Info

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Author

Munir Ahmad

Program

PhD

Institute

University of the Punjab

City

Lahore

Province

Punjab

Country

Pakistan

Thesis Completing Year

2015

Thesis Completion Status

Completed

Subject

Biological Sciences

Language

English

Link

http://prr.hec.gov.pk/jspui/bitstream/123456789/13102/1/Munir_Ahmed_Zoology_HSR_2015_UoP_Lahore_21.10.2016.pdf

Added

2021-02-17 19:49:13

Modified

2024-03-24 20:25:49

ARI ID

1676726816828

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During the present work we have investigated the regiospecificity of acylation of human insulin using reagents of two different chain lengths and have developed chemogenetic approaches to the preparation of acylated proinsulin derivatives. These were then converted into insulin modified at the ɛ-amino group of Lys29B. For the acylation of human insulin (Sigma) and proinsulin derivative, esters of N-hydroxysuccinimde (Nsuccinimidyl acetate and N-succinimidyl laureate) were used The reaction of N-succinimidyl acetate with insulin was studied using different ratios of the reagent and protein and at various pH values. The MALDI-TOF analysis of the crude reaction mixture showed the formation of mono and di acetyl insulin in about equal amounts, while tri acetyl insulin was present as a minor product. Thiolytic cleavage of these derivatives led to the separation of the two chains and showed that the mono acetyl insulin contained the acetyl moiety only in the B-chain, which was located at the ɛ-amino group of K29B while the di-acetyl insulin following separation of the two chains was acetylated in both the chains. Next, the above protocol was extended to acylation using reagent with a C12 chain length, N-succinimidyl laureate. The MALDI-TOF spectrum of a typical experiment showed the presence of mono as well as di dodecanoyl species, with the predominance of the former. The thiolytic cleavage of mono dodecanoyl insulin showed that the modification was on the B-chain and its tryptic digest analysis, following thiolysis, established that the residue modified by the reagent was present in the octa peptide fragment constituting residues G23B to T30B in the B-chain of insulin. Since the only amino group in this part of insulin is the amino group of K29B this must have been acetylated. From the profile of acylation, found above, it was concluded the ε-amino group Lys29B is the least hindered and accessible to C2 as well as C12 reagents, then is the amino group of Gly1A which is accessible to C2 but not the C12 reagent, finally that of Phe1B which is most hindered and accessible to neither. Native human proinsulin contains three sites for N-acylation; its N-terminal amino group, Lys64 in the C-peptide region and Lys29 destined to become Lys29B xxvii in the derived insulin Our projected objective required the availability of proinsulin derivatives which contained minimum number of N-acylation sites, necessitating the mutation of Lys29by a residue lacking an amino group, yet maintaining the characteristics of the dibasic residues, Arg65- Lys64, required for the removal of the Cpeptide. Furthermore, the N-terminal Met which will be the integral part of any genetically produced protein in E. coli is also likely to be modified during the acylation of proinsulin at Lys29, and should be present in a sequence that is removed during the processing of proinsulin by a single-pot reaction involving trypsin cum carboxypeptidase B, generating the N-terminal Phe of the B-chain of insulin. Initially, we produced proinsulin mutants, in which Lys64 was changed to Arg64 and the Nterminal contained five different linkers which should be removable by trypsin during the excision of the C-peptide These are designated as MR-(R64) hpi, MRR-(R64) hpi, MTRR-(R64) hpi, MFTRR-(R64) hpi and MHHR-(R64) hpi. E. coli BL 21 codon plus, harboring pET21a derivatives encoding the proteins, gave good expression of the desired proteins which were found in inclusion bodies. The proteins were solubilized in 8 M urea and refolded using 1: 10 molar ratio of cysteine: cysteine. The overall yield of the correctly folded proteins, based on the proinsulin polypeptide content was 30%. These mutants [MR-(R64) hpi, MRR-(R64) hpi, MTRR- (R64) hpi, MFTRR-(R64) hpi and MHHR-(R64) hpi] were purified to homogeneity by sepharose Q chromatography followed by RP-HPLC and gave the predicted masses on analysis by MALDI-TOF. These all were then converted into insulin and again analyzed be MALD-TOF. One problem with all of the mutants [MR-(R64) hpi, MRR- (R64) hpi, MTRR-(R64) hpi, MFTRR-(R64) hpi and MHHR-(R64) hpi] was that during the excision of the C-peptide the cleavage at the C/A junction occurred not only at, the desired, R65-G66 bond but also between R64-R65 thus yielding insulin as well as another species in which insulin contained an Arg residue at its A-chain. In order to circumvent the unwanted cleavage between R64-R65, we searched for a mutant which will contain a single tryptic site at the C/A junction, yet maintain the intrinsic properties of the dibasic amino acids at this site to give the folding profile expected from the native sequence. The choice fell on glutamine at position 64, and K64-Q64 mutants containing the four linkers [MRR-(Q64) hpi, MTRR-(Q64) hpi, MFTRR- (Q64) hpi, MHHR-(Q64) hpi] were engineered which following characterization of the xxviii DNA sequences were expressed, the proteins refolded and purified as above. In general, the protein profile of these K64-Q64 mutants was similar to that noted for the K64-R64 series. With respect to processing by trypsin cum carboxypeptidase B, the linker from MRR-(Q64) hpi was removed most smoothly With the encouraging results above, MRR-(Q64) hpi was selected for further studies and treated with acylating agents of two chain lengths used above In the case of modification with N-succinimidyl acetate, mono and di acetylated derivatives of MRR- (Q64) hpi were produced in the ratio of 1:1. These when treated with trypsin and carboxypeptidase B, singly or as a mixture, led to a smooth processing of the linker as well the C-peptide producing mono acetyl insulin. It is gratifying that, as hoped for, the linker whether contained a free or an acylated amino group at N-terminal was removed with equal facility. Reaction of N-succinimidyl laureate with MRR-(Q64) hpi, predominantly led to the formation of mono dodecanoyl insulin, containing modification at the ε-amino group of K29; di derivative with modifications at the ε-amino group of Lys29 and N-terminal methionine was produced as a minor product. Treatment of the mono derivative or of the mixture containing the di derivative with trypsin cum carboxypeptidase b gave dodecanoyldes-30 insulin. The biological activity of the modified and unmodified insulins, prepared in the present study, was determined and it was found that these were as active as reference derivatives.
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لگتا ہے آج کل اسے میرا ہی دھیان ہے

لگتا ہے آج کل اُسے میرا بھی دھیان ہے
جانے یہ بات سچ ہے کہ دلکش گمان ہے

Emerging Trends of Ethics in Higher Educational Institutions: An Analysis of Universities Students’ Perception in Islamic Context

The basic characteristics and moral values of Islamic society include peace, harmony, brotherhood, equality, justice, respect and tolerance. Islam advises humans to spend their life according to the characteristics of Islamic society. The word ‘ethic’ brings harmony in the spiritual and physical attributes of a person. Islamic system preaches good moral values and indicates ways to avoid ill-mannered behavior. An individual with good moral values reflects good faith and blessings of Almighty Allah. But the studies show that Pakistani society and especially the youngsters are growing up without proper training & teachings about ethics and moral values. This research work aims to explain the need for ethical teachings in Islamic society. Quantitative method has been used in this study. Two hundred questionnaires have been filled by the three Universities’ students. The opinion of the students has been presented through SPSS in tabular forms and figures. According to this fieldwork, the majority of students had a lack of training related to ethical values from home to institutions, due to which we are facing ill-mannered behavior in Universities. This research work may be significant for its specific theme and research background; hence it can be used for the benefit of the policy makers, the scholars and the readers at large.

Genetic Mapping of Genes Involved in Autosomal Recessive Mental Retardation

Mental Retardation (MR) or cognitive impairment is the most common and unsolved socio-economic problem in healthcare. MR is the condition with sub-average intellectual functioning, impairment in at least two of the adaptive skills (communication ability, self care, reading and writing ability etc) and onset before 18 year of age. Currently extensive knowledge exists regarding X-linked MR (217 loci and 98 genes) but only thirty loci and six genes for autosomal recessive NSMR have been discovered to date. In the current study five consanguineous Pakistani families were recruited for clinical and molecular analysis. Clinical investigations include the intelligence quotience (IQ) estimation (amended standard questionnaire), biometric data collection, computed tomography (CT) and magnetic resonance imaging scan (MRI) and biochemical testing. These investigations clearly indicate segregation of nonsyndromic mental retardation (NSMR) in these families except family A, which segregate autosomal recessive syndromic mental retardation. After clinical analysis, whole genome SNP genotyping with 500K Nsp array was carried out in the selected individuals of all families to perform homozygosity mapping followed by copy number analysis and microsatellite based genotyping. The clinical analysis of family A grossly showed myopathy (abnormal spectrum of EMG and elevated level of LDH enzyme), strabismus, neck webbing, facial deformities and poor developmental milestone. The family A was mapped to MRT5 locus, spanning over the region of 2.51 Mb [from 5,145,028 to 7,657,537 bp {May 2004 (NCBI35/hg17)}]. The subsequent mutation analysis of candidate genes identified a novel misssense (c.2100G>A) mutation in exon 19 of NSUN2 gene, which leads to substitution of Gly (GGA) with Arg (AGA) at amino acid position 679 (p.G679R). The subsequent expression studies of mutated NSUN2 encoded protein exhibited abnormal expression in cytoplasm indicating an important role of glycine residue, in protein localization and biogenesis. The family B with severe MR associated with speech disability and aggressive attitude was presented as segregating NSMR. Whole genome scan mapped this family to a 12.494 Mb region on chromosome 8. The identified HBD interval was flanked by rs6989820 and rs2237834 and harbors MCPH1 and TUSC3 genes, but sequencing of MCPH1 gene failed to reveal presence of pathogenic variant in the affected individuals of this family. The CNV analysis of the whole genome data identified a novel 170.63 Kb {Feb.2009 (GRCh37/hg19)} deletion in TUSC3 gene spanning entire gene except its promoter and first exon. Gross clinical spectrum (skeletal, microcephalic, neurologic symptoms) of family C was normal therefore it was treated as nonsyndromic MR family. This family was mapped to 2p25.3-p25.2 locus during exclusion mapping of known loci of ARNSMR. The identified region spans over the length of 6.57 Mb with a centromeric boundary defined by a recombination event involving markers D2S281 and D2S2166. This region has 21 protein coding genes but the sequence analysis of eight candidate genes in the linked interval did not revealed any pathogenic mutation. Molecular analysis of family D identified multiple homozygous regions on chromosomes 1, 3, 10, 20 and 22 (with positive hits on the basis of SNP data of four individuals) but the microsatellite genotyping in complete family ruled out loci on chromosome 1, 3 and 10. The linkage analysis, performed for all characterized homozygous loci, generated highest LOD score of 2.1039 at D20S602. Region of homozygosity on chromosome 20 was flanked by SNPs rs6140226 and rs6074396, delineating a minimum critical region of 4.998 Mb {Feb.2009 (GRCh37/hg19)}. This minimum critical region contains BTBD3 gene but the sequence analysis ruled out the presence of any pathogenic variant in the affected individuals of family D. So these findings either indicate involvement of other gene in this region or leading to the complex genetics by considering loci on chromosome 20 and 22 as responsible factors. The homozygosity mapping of family E revealed a single short HBD region on 2p12 from rs17020436 to rs11678145 which delineated a 1.1 Mb region. This short interval harbor one gene, four mRNAs and three spliced ESTs. The genetic player responsible for MR in this family can be identified by using next generation sequencing of the identified HBD to screen the pathogenic variants segregating with disease phenotype. The present work has shown that genetic players are associated with the significant number of Pakistani families with MR. The current study provides further support regarding genetic heterogeneity of MR in Pakistan, thus is a significant contribution towards the elucidation of common and emerging molecular pathways related to cognition/learning. Our study also signifies the importance of methylation in the development and functioning of the cognition and it is anticipated that additional players will be identified in future studies which have similar functions. The work presented in this thesis results in the following publications 1. Khan MA, Rafiq MA, Noor A, Ali N, Ali G, Vincent JB, Ansar M. A novel deletion mutation in the TUSC3 gene in a consanguineous Pakistani family with autosomal recessive nonsyndromic intellectual disability. BMC Med Genet 2011; 22;12(1):56. 2. Rafiq MA, Ansar M, Marshall CR, Noor A, Shaheen N, Mowjoodi A, Khan MA, Ali G, Amin-ud-Din M, Feuk L, Vincent JB, Scherer SW. Mapping of three novel loci for non-syndromic autosomal recessive mental retardation (NS-ARMR) in consanguineous families from Pakistan. Clin Genet 2010;78:478-83. 3. Khan MA, Rafiq MA, Noor A, Ansar M, Windpassinger C, Vincent JB. A novel gene, NSUN2, causes a new MR syndrome in a Pakistani origin family. Manuscript in preparation for submission to Nature Genetics.