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Home > Phenotypic and Molecular Characterization of Extended Spectrum Beta-Lactamases in Clinical Isolates of Klebsiella Pneumoniae Among Children

Phenotypic and Molecular Characterization of Extended Spectrum Beta-Lactamases in Clinical Isolates of Klebsiella Pneumoniae Among Children

Thesis Info

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External Link

Author

Ejaz, Hasan

Program

PhD

Institute

Institute of Industrial Biotechnology

City

Lahore

Country

Pakistan

Thesis Completing Year

2012

Thesis Completion Status

Completed

Subject

Natural Sciences

Language

English

Link

http://prr.hec.gov.pk/jspui/handle/123456789/1400

Added

2021-02-17 19:49:13

Modified

2024-03-24 20:25:49

ARI ID

1676726884305

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Extended-spectrum b-lactamases (ESBLs) are enzymes that can hydrolyze extended- spectrum cephalosporins and monobactams. ESBL-producing Klebsiella pneumoniae are responsible for serious morbidity and mortality among paediatric patients. This study aimed to determine the frequency of ESBL-producing K. pneumoniae, phenotypic characterization techniques and antimicrobial resistance pattern. The study was also established to determine the molecular characterization of blaSHV, blaTEM, blaCTX-M genes which are responsible for ESBL-mediated antibiotic resistance. The study was conducted at The Children’s Hospital & Institute of Child Health, Lahore, Pakistan during May 2010 to February 2012. The molecular studies of blaSHV, blaTEM, blaCTX-M and integron genes were performed during October 2012 to April 2013 at the Microbiology and Immunology Department, The University of Melbourne, Australia. Various clinical samples were collected and studied from paediatric patients, including blood, central venous pressure line, cerebrospinal fluid, ear swab, endotracheal tube, peritoneal dialysis catheter, pleural fluid, pus, tracheal secretion, urine and wound swab. The organisms were identified using various biochemical tests and the API 20E system. ESBL production was determined using double disk synergy test (DDST) and Clinical and Laboratory Standards Institute (CLSI) confirmatory test. The antimicrobial resistance pattern of ESBL-producing K. pneumoniae was determined using Kirby-Bauer disc diffusion method with various antibiotic groups. The target genes were amplified and DNA sequencing was performed for blaSHV and blaTEM genes to find out the mutations responsible for ESBL genotype. Screening of 710 K. pneumoniae isolates showed 214 (30.1%) were ESBL screen positive K. pneumoniae. The CLSI confirmatory test showed significantly greater sensitivity (p<0.0001) compared to DDST. There were 82 (38.3%) neonates infected with ESBL K. pneumoniae and 152 (71.0%) of the total cases were males. The most common sources of ESBL K. pneumoniae were blood (117; 54.7%) and urine (46; 21.5%). Of the 214 cases, 92 (43.0%) cases were isolated from Neonatal Nursery Unit and (47; 22.0%) Nephrology. Patients presented with various symptoms such as fever (125 cases; 58.4%) and respiratory distress (104 cases; 48.6%). Important interventions given to the patients included intravenous line (209 cases; 97.7%), urinary catheters (46; 21.5%) and endotracheal tube (18; 8.4%). The outcome of the patients showed the successful discharge of 127 (59.0%) patients after treatment while there were 56 (26.0%) cases of mortality and 31 (15.0%) left against medical advice (LAMA). There was no significant correlation (p=0.1396) found between length of stay and mortality of the patient. Neonates infected with K. pneumoniae had a significantly higher chance of mortality than the older age groups (p=0.0140), while there was no association of outcome (p=1.0000) between the two genders. A higher mortality rate (p=0.0005) was seen among the septicemic patients. The mortality rate was significantly higher (p=0.0013) in patients who presented with respiratory distress symptoms. An antibiotic resistance profile of ESBL-producing K. pneumoniae was performed against 18 antibiotics. All ESBL K. pneumoniae isolates were resistant to ceftazidime, ceftriaxone, cefotaxime and cefuroxime. The antibiotics that K. pneumoniae were most resistant to, include co-amoxiclav (212; 99.1%), cefpodoxime (210; 98.1%), co-trimoxazole (207; 96.7%), gentamicin (201; 93.9%), tobramycin (199; 93.0%), aztreonam (192; 89.7%), cefepime (171; 79.9%) and amikacin (164; 76.6%). Only 41 (19.2%) isolates were resistant to cefoxitin and 96 (44.9%) showed medium level resistance to ciprofloxacin. Only one (0.5%) isolate showed resistance to imipenem and meropenem. The number of isolates displaying resistance to sulbactam-cefoperazone and piperacillin-tazobactam were 13 (6.1%) and 7 (3.3%), respectively. The number of antibiotics to which K. pneumoniae were resistant in each patient were compared in patients with (n=67) or without (n=147) history of antibiotic use in the last three months. No significant difference (p=0.5298) found between the two groups. Amplification and analysis of bla genes showed the majority of K. pneumoniae isolates carry the blaSHV (99.5%), blaTEM (93.0%) and blaCTX-M (99.0%) genes. All of the TEM genes isolated in this study were wild type TEM-1 β-lactamases. The ESBL type SHV detected in the present study were SHV-28 (19.2%), SHV-12 (5.2%) and SHV-110 (0.5%), while non-ESBL type SHV were SHV-1 (20.2%), SHV-11 (31.5%), SHV-42 (1.9%) and SHV-27 (1.4%). The CTX-M-1 group β-lactamases was identified in 99% of the strains. K. pneumoniae isolates in the present study were also studied for the presence of an integrase gene and it was found that 94.9% of isolates had a class 1 integrase, while the class 2 and 3 integrase genes were identified in 1.4% and 0.9% of isolates, respectively. This is the first study conducted on clinical isolates of ESBL-producing K. pneumoniae among paediatric patients from a tertiary care paediatric hospital of Pakistan. The high prevalence of ESBL-producing K. pneumoniae among paediatric patients is responsible for prolonged hospital stay and an increased financial burden on parents and the government. Cephalosporins, monobactams, aminoglycosides and sulfonamide drugs do not prove to be a good choice for the treatment of ESBL-producing K. pneumoniae infections to high rates of resistance to these antibiotics. This study recommends the use of carbapenems, sulbactam-cefoperazone and piperacillin-tazobactam for the treatment of ESBL K. pneumoniae infections but they should be used as a last resort following culture and susceptibility testing. It is being recommended that a stricter infection control policy should be implemented to control the horizontal transfer of blaSHV, blaTEM, blaCTX-M genes and integrons in clinical isolates of K. pneumoniae and other bacteria.
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مولانامحمد حفیظ اﷲ

آہ! شمس العلماء مولانا محمد حفیظ اﷲ
سابق مدرس اعلیٰ دارالعلوم ندوہ
حضرت مولانا ابوالحسنات عبدالحئی صاحب فرنگی محلی کی آخری یادگار مٹ گئی یعنی ان کے آخری شاگرد یعنی مولانا محمد حفیظ اﷲ صاحب، جو ان کی مجلس درس کی اکیلی یادگار رہ گئے تھے، ۱۳۶۲؁ھ کے خاتمۂ ماہ میں وفات پاگئے۔
مرحوم ۱۸۵۶؁ء کے آخر میں ضلع اعظم گڑھ کے چھوٹے سے گاؤں بندی میں پیدا ہوئے تھے، غدر ۱۸۵۷؁ء میں وہ ۶ ماہ کے تھے اور اسی قدر وہ مولانا شبلی نعمانی سے بڑے تھے، ابتدائی کتابیں گھر پر پڑھ کر وہ اپنے عزیز مولانا سلامت اﷲ صاحب جیراجپوری (والد حافظ اسلم صاحب جیراجپوری) کے ہمراہ بنارس تعلیم کے لئے گئے، وہاں سے واپس آکر مدرسہ چشمۂ رحمت غازی پور میں پڑھنے کے لئے گئے، وہاں فارسی کی اونچی کتابیں پڑھیں، اس زمانہ میں غازی پور میں حضرت مولانا عبدالحلیم صاحب فرنگی محلی کے شاگرد رشید مولانا غلام جیلانی صاحب تھے، ان سے باصرار عربی کتابیں شروع کیں اور چند سال میں ان سے متوسطات تک پڑھ کر انہی کے مشورہ سے فرنگی محلی لکھنؤ میں مولانا ابولحسنات عبدالحئی صاحب فرنگی محلی کی مجلس درس میں حاضر ہوئے، یہ وہ زمانہ تھا، جب داروغہ حیدربخش کی مسجد جو چوک میں عربی اور طب پڑھے والوں کا گویا دارالاقامۃ تھا، نئی بن کر تیار ہوئی تھی، چنانچہ حضرت مولانا عبدالحئی صاحب کی سفارش سے ان کو اس کے حجرہ میں رہنے کی جگہ ملی، اور یہاں کئی سال رہ کر معقولات اور دینیات کی تعلیم حاصل کی، فراغت کے بعد جو غالباً ۱۸۸۰؁ء میں ہوئی ہوگی وہ کاکوری ضلع لکھنؤ کے ایک مقامی مدرسہ میں مدرس مقرر ہوئے، یہی سلسلہ ہے جس سے وہ جناب منشی احتشام علی مرحوم رئیس کاکوری سے ملے، کہ پھر ان کے دل الگ نہ ہوئے اگلے زمانہ میں دوستوں...

NAC Transcription Factors Role in Various Biotic and Abiotic Stresses

NAC transcription factors are considered as main family of transcriptional regulators in plants. NAC gene family members play significant contribution in regulating transcriptional reprogramming in plants related to plant stress response. These proteins possess highly conserved DNA binding domains and play a diverse functions in several plants. NAC gene is related to several stress factors including biotic and abiotic factors. NAC transcription factors controls several interrelated processes and their protein products can function as negative or positive regulators in many cellular processes. These regulatory functions are also controlled by NAC proteins such as auto and cross regulation. These regulatory proteins are regarded as a central regulator for the interaction of phytohormones in various stress signaling pathways. This review highlights the role of NAC transcription factors in modulating gene expression and their role in various biotic and abiotic stress tolerance in plants.

Impact of Thermal and Chemical Stress on Sulfolobus Solfataricus P2 Genome and Components of Transcription Apparatus

Archaea represent the third domain of life and comprise a highly diverse class of microorganisms some of which can withstand extremes of temperature, pressure, pH and salinity. It is for this reason that members of this group are also collectively referred to as ―extremophiles‖. Archaea have a number of unique features such as ether-linked lipids in their cell membranes but also share several important characteristics with eukaryotes and bacteria. For example, like bacteria archaeal genomes are circular but their gene promoters and transcriptional apparatus is more closely related to the eukaryotic RNA polymerase-II system. In Sulfolobus, a model crenarchaeote, transcription is dependent on TATA binding protein (TBP), transcription factor-B1 (TFB1), and perhaps also on transcription factor-E (TFE) which serve as specificity factors for the 12 subunit RNA polymerase. Sulfolobus genome also encodes for other putative transcription factors such as TFB2, and TBP- interacting protein-49 (TIP49) whose functions remain elusive. All cells are capable of coping with transient thermal and chemical stresses by triggering expression of discrete sets of genes whose products prevent cell death. Such responses have been well documented in bacteria and eukaryotes but the effect(s) of such insults on cell morphology, proteome, genome, transcription as well as on the fates of various components of transcription in archaea remain unknown. In this study it was hypothesised that stress modulates the expression and/or stability of one or more components of Sulfolobus transcriptional apparatus. To test this, the cellular and biochemical consequences of subjecting Sulfolobus solfataricus P2 to chemical and thermal stresses as well as their effects on Sulfolobus transcription machinery were studied. Results show that elevating the temperature from 76 ̊C to iv90 ̊C (heat shock) for 5 minutes results in large scale protein aggregation and altered cellular morphology of Sulfolobus heat shocked cells. Moreover, immunochemical analyses suggested that TFE levels in heat shocked cells experience a rapid decline while its mRNA levels continue to rise even after 30 minutes of heat shock. Furthermore, temperature-shift experiments demonstrate that outgrowth of heat shocked cells is dependent on restoration of TFE levels. While heat shock promotes selective depletion of TFE and does not affect genomic or proteomic integrity to any significant extent, exposure of cells to >0.25% isopropanol or >100 mM hydrogen peroxide is detrimental. Specifically, cells treated with 2% isopropanol or 200mM hydrogen peroxide alter their morphologies and harbour degraded genomes as well as proteomes that are partially depleted. Isopropanol and hydrogen peroxide exposure does not promote random protein degradation but instead preferentially impacts fates of certain transcription factors. Whereas isopropanol mediated degradation of genomic DNA in Sulfolobus cells is not affected by EDTA, oxidative stress-induced genomic breakdown is inhibited with EDTA. Moreover, the damaging effects of 2% isopropanol or 200 mM H 2 O 2 on host genome and proteome are restricted to Sulfolobus and are not observed in either bacterial or cultured eukaryotic human cells. Taken together, these results demonstrate that in Sulfolobus solfataricus P2 cells: 1) TFE is depleted by heat shock and does not appear to function as a general transcription factor, 2) thermal and chemical stresses impact the stability of TBP, TFB1, TFE, TIP49 and RpoB differentially, and 3) isopropanol and hydrogen peroxide mediated genomic DNA degradation is observed only in archaeal cells and likely occurs through different mechanisms.