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Home > Prevalence, Etiology and Management of Blackleg and Soft Rot of Potato

Prevalence, Etiology and Management of Blackleg and Soft Rot of Potato

Thesis Info

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Author

Hafiz Farhad Ali

Program

PhD

Institute

The University of Agriculture

City

Peshawar

Province

KPK

Country

Pakistan

Thesis Completing Year

2012

Thesis Completion Status

Completed

Subject

Applied Sciences

Language

English

Link

http://prr.hec.gov.pk/jspui/handle/123456789/1303

Added

2021-02-17 19:49:13

Modified

2024-03-24 20:25:49

ARI ID

1676727011696

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Potato (Solanum tuberosum L.) is the most important vegetable crop of the world, including Pakistan, ranking number one among all vegetables both in production and consumption. Although bacterial diseases (such as blackleg and soft rot) cause substantial damage to potato crop in Khyber Pukhtunkhwa, yet no significant research has been done so far on any aspect of these diseases. We conducted extensive surveys (2007-2009) to document the status of these diseases in our province and found that disease severity and incidence, at different locations, ranged from 2-40 % and 5-75 %, respectively. The frequency of the three causal organisms was found to be 47.61% for Erwinia carotovora subsp. atroseptica (Eca), 45.23% for E. carotovora subsp. carotovora (Ecc), and 7.14% for E. chrysanthemi (Ech). As there is some debate about the role of tuber-borne, soil-borne, and diseased plant-debris-borne primary inoculum of Eca in causing primary infections, we studied these sources of inocula. The results indicated that the pathogen population in inoculated tubers kept increasing during the entire duration (80 days) of the study whereas that in diseased plant debris declined very slowly. No bacteria could be detected in artificially inoculated soil after two months. Therefore, it was concluded that the infected tubers are the best source of inoculum followed by diseased plant debris. Because studying pathogen population helps in the control of the disease it causes, therefore, we were interested in finding diversity among the isolates of the pathogens causing potato blackleg and soft rot. The intra-specific diversity among the isolates of Ecc, and Ech is well known but that among the isolates of Eca is debatable. For this reason, we used randomnly amplified polymorphic DNA (RAPD) to amplify DNA from 20 Eca isolates using 2 selected random primers. The data (bands) generated were used to perform cluster analysis using the un-weighted pair-group method with arithmetical average (UPGMA) of Genetyx software, version 7.0 and the viiresulting 4 main clusters were presented as dendrogram. We were also interested in knowing if the genotypic differences among the Eca isolates would be correlated to some phenotypic character; so, we used potato stem rot assay to divide the 20 Eca isolates among 4 aggressiveness groups. Our data suggested that although the isolates genetically differed from each other by as much as 40%, these differences were not tightly correlated to the pathogenic differences found among them. Because blackleg and soft rot of potato is a hard-to-control disease, we were interested in an integrated management of the disease. The components of the integrated management that we studied included: (i) use of different plant extracts as seed tuber treatment to kill the contaminating blackleg and soft rot bacteria, (ii) use of balanced nutrition to enhance the competitiveness of the plant host against the pathogen, and (iii) finding resistance, if any, against blackleg and soft rot of potatoes among the popular commercial potato cultivars available to local farmers. Among the different aqueous extracts used, neem extract was found to be the best which decreased the disease incidence and disease severity by 71.18% and 56.86%, respectively as compared to the control. Neem extract also increased yield per plant by 344.44% as compared to that of control. The results of the host fertilization studies concluded that the fertilizer combination of N 3 P 1 K 3 (262/252/262 kg.ha -1 ) which is slightly higher than the normally practiced dose (247/247/247 kg.ha -1 ) was the best in bringing the disease to a minimum and subsequently increasing the yield. In case of varietal screening, based upon our overall results, no variety was found to be resistant against blackleg and soft rot of potatoes. However, field performance of variety Kuroda was comparatively better than other varieties whereas variety Desiree seemed to be the most susceptible.
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ہو میرا کام غریبوں کی حمایت کرنا

ہو میرا کام غریبوں کی حمایت کرنا
نحمدہ ونصلی علی رسولہ الکریم امّا بعد فاعوذ بااللہ من الشیطن الرجیم
بسم اللہ الرحمن الرحیم
معزز اسا تذہ کرام اور میرے ہم وطن ساتھیو!
آج مجھے جس موضوع پرلب کشائی کا موقع مل رہا ہے وہ ہے:’’ہو میرا کام غریبوں کی حمایت کرنا‘‘
صدرِذی وقار!
شاعر اپنے شعر کے اس مصرعے میں اپنی ایک خواہش کا اظہار کر رہا ہے۔ ایک آرزو اس کے دل میں انگڑائیاں لے رہی ہے، ایک حسرت اس کے دماغ کے در یچوں کو دستک دے رہی ہے، ایک تمنا ہے جس کی روشنی سے وہ اپنے آنگن کومنور کرنا چاہتا ہے۔’’ اس آرزو کی تکمیل میں وُہ عزم صمیم کا حامل ہے‘‘۔
جنابِ صدر!
یہ تمنامال و دولت کے لیے نہیں ہے، یہ آرزو جائیداد اور بنک بیلنس کے لیے نہیں ہے، اس کی جستجو فلک بوس محلات کی تعمیر کے لیے نہیں ہے۔ اس کی یہ آرزو درازی عمر کے لیے نہیں ہے، اس کی اس خواہش کامطمع نظر اعزاء واقرباء نہیں ہیں، اس کی اس تمنا کا محور معاشی اور معاشرتی اقدار کا تحفظ نہیں ہے۔
جنابِ صدر!
علامہ اقبال رحمۃ اللہ علیہ شاعر مشرق ہیں وہ اپنے اس مصرعے کے ذریعے محبت و پیار کے جذبے کو برانگیختہ کرتے ہوئے نظر آرہے ہیں ، وہ رواداری اور اخوت کی لکیر کو مزید گہرا کرنا چاہتے ہیں ، وہ ہم آہنگی اور یگانگت کے درمیان حائل خلیج کو ختم کرنا چاہتے ہیں۔
صدرِ ذی وقار!
ان کی خواہش یہ ہے کہ ایک انسان دوسرے انسان کے کام آئے ، سسکتی اور تڑپتی ہوئی انسانیت کی خدمت کرے، ظلم و استبداد کی چکی میں پستی ہوئی انسانیت کی فلاح مقصود ہو،غربت کی لکیر سے نیچے زندگی گزارنے والوں کے لیے دستِ تعاون بڑھائے، بحر...

Contemporary Challenges Regarding Muslim-Christian Dialogue and Its Solution in the Light of Nobel Sīrah of the Holy Prophet ﷺ

Islam recognizes the status and respect of other faiths and communities for socioeconomic and sociopolitical development. Therefore, the kind Messenger of Allah صلى الله عليه وسلمwas the first ever personality in the human history who accepted the identity of other faiths and involved them in state affairs of the city state of Madīnah in 610 CE/1AH. The citizens of the first Islamic State including Jews, Christians and Polytheists were treated as equal and respected citizens. The door of discussion and mutual cooperation were opened for all faiths and communities of the society. For that purpose, the Holy Prophet صلى الله عليه وسلم set out some special parameters and principles of dialogue and interaction with other faiths. These principles may be freedom of religion, mutual respect and cooperation, interfaith tolerance, focus on common issues, active participation in state and social activities etc. The history is eye witness of this conduct that Muslim rulers and public care these principles and promote them in all ages of the Muslim governance. However due to some reason modern era have been observed of not being compatible with minorities in east as well as in the west. Categorically, they are having encounters with many difficulties, challenges and issues for security, rights and peaceful coexistence in all over the world. Unfortunately, Pakistan have also considered to be the part of hyper national and international sociological environment regarding minorities. In order to overcome these issues and challenges then we must follow the Prophet’s Seerahصلى الله عليه وسلم regarding interfaith dialogue and mutual cooperation in a pluralistic society like Pakistan. In this study, the efforts are made to explore contemporary challenges and its solution in light of the Seerah of the Prophet صلى الله عليه وسلمfrom current sociopolitical context.

Identification and Characterization of Pharmacological Inhibitors of Alkaline Phosphatase Isozymes & Nucleotide Pyrophosphatase Isozymes

Ecto–nucleotidases are nucleotide metabolizing enzymes that are categorized into four different families; Alkaline Phosphatases (APs), Nucleotide Pyrophosphatase/phosphodiesterases (NPPs), Nucleoside Triphosphate Diphosphohydrolases (NTPDases) and Ecto–5′–Nucleotidase (e5′NT). These enzymes are responsible for the hydrolysis of extracellular nucleotides, i.e., adenosine–5′–triphosphate (ATP), adenosine–5′–diphosphate (ADP), adenosine–5′– monophosphate (AMP), uridine–5′–triphosphate (UTP) and uridine–5΄–diphosphate (UDP) into nucleosides, i.e., ADP, AMP, UDP, UMP and adenosine, respectively. The structural and functional role of these ecto–nucleotidases in purinergic signaling varies considerably between enzyme classes. Each member possesses different enzymatic and cellular expression properties. Among the different ecto–nucleotidase families, APs and NPPs synergize and overlap in their functions, particularly during skeletal mineralization. Among different isozymes of APs and NPPs, tissue non– specific alkaline phosphatase (TNAP) and Nucleotide Pyrophosphatase/phosphodiesterases-1 (NPP1) play an essential role in maintaining extracellular levels of pyrophosphate (PPi) and inorganic phosphate (Pi), an important factor to control mineralization process. This balance is highly conserved by opposing actions of NPP1 that produces PPi and TNAP which generates Pi by catalyzing PPi. In this way, PPi/Pi ratio remains constant inside and outside the cell membrane. An overexpression of these isozymes is implicated in a variety of pathophysiological processes, including chondrocalcinosis, immunological diseases, osteoarthritis, type 2 diabetes, neurodegenerative diseases, bone mineralization, cell adhesion, activation, proliferation, vascular calcification and cancer, and thus they represent an emerging drug targets. Therefore, potent and selective inhibitors of h-TNAP and h-NPP1 might be useful candidates for the treatment or prevention of some diseases. In this study, different derivatives of amides, chromones, quinolones and pyrazoles were tested for their potential to inhibit membrane–bound isozymes. The obtained results suggested that amide derivatives 3b, 4d, 2b (diarylsulphonamides), 4i, 4f, 4b (1H–pyrazol–4–yl benzamides), 2i, 2e and 2a (thiazol–2–ylidene–benzamides) were found highly potent inhibitors of h-TNAP Among the tested compounds, 3b, 4i and 2e showed the maximum inhibitory potential with an IC50 values of 0.21 ± 0.02, 0.34 ± 0.08 and 0.079 ± 0.002 µM, respectively. In the chromone derivatives, 1f, 1d, 1c (3,3′– carbonyl–bis(chromones), 7c, 7h, 7i (3–(5–(benzylideneamino)thiozol–3–yl)–2H– chromen–2–ones), 10a and 10g (triazolothiadiazin–3–yl 2–H–chromone) were found potent inhibitors of h-TNAP. Among the chromone derivatives 1d, 7h and 10a exhibited maximum inhibition with an IC50 values of (IC50±SEM) 2.47 ± 0.03, 0.21 ± 0.04 and 0.31 ± 0.09 µM, respectively. From the quinolone and quinoline derivatives, 3j, 3b (quinoline–4–carboxylic acid), 3a, 2b and 5a (4–quinolone) were found to be potent inhibitors against h-TNAP and among these compound 3j and 2b showed maximum inhibitory potential with an IC50±SEM values of 0.11 ± 0.07 and 1.34 ± 0.11 µM, respectively. The isoquinoline derivatives; 4p, 4l and 4i were identified as potent inhibitors of NPPs, where 4i was found to be the most potent inhibitor with an IC50 value of 0.11 ± 0.01 µM. The last group of compounds, i.e., Pyrazoles derivatives, 6i, 6e, 5e (2–arylated thiadiazolopyrimidones) were identified as the selective inhibitors of NPPs, and the most potent derivative was 6e (IC50±SEM= 0.31±0.01 µM). Compounds 4i, 4m and 4n (5–perfluoroalkylpyrazoles) were found as the selective inhibitors of APs with 4i (IC50±SEM= 0.45±0.01 µM) as the most potent inhibitor of the series. Compound 6a and 6b (pyrazole pyrimidones) were identified as the dual inhibitors of both APs and h-NPP-1. Kinetics experiments of the most potent derivatives were carried out to find the mechanism of inhibition on the respective isozyme by these derivatives. To determine the plausible binding modes and binding energies, docking studies were performed that supported the in–vitro inhibitory activity of potent and selective inhibitors. The cytotoxic results obtained from MTT assay confirmed that the selected compounds library had anticancer potential against MCF–7, K–562 and HeLa cell lines in comparison to normal cell line, i.e., BHK–21. Compounds 3b (diarylsulphonamides), 4i (1H–pyrazol–4–yl benzamides), 2i (thiazol–2–ylidene–benzamides), 1f (3,3′–carbonyl–bis(chromones), 7c (thiozol–3–yl–2H–chromen–2–ones), 10a (triazolothiadiazin–3–yl 2H–chromen– 2–ones), 4p (isoquinolones), 3j (quinoline–4–carboxylic acid), 3a (4–quinolone), 6i (2–arylated thiadiazolopyrimidones), 4i (5–perfluoroalkylpyrazoles) and 6b (pyrazole pyrimidones) induced maximum growth inhibition of MCF–7 cells and exhibited GI50 values 5.75 ± 0.12, 8.59 ± 0.16, 4.16 ± 0.17, 10.2± 1.07, 8.99 ± 1.24, 8.51 ± 0.62, 8.21 ± 0.31, 5.49 ± 0.32, 10.4 ± 2.05, 5.61 ± 0.72, 5.52 ± 0.92, 5.65 ± 0.75 and 13.5 ± 1.03 µM, respectively. Compounds 4d (diarylsulphonamides), 4f (1H–pyrazol–4–yl benzamides), 2e (thiazol–2–ylidene–benzamides), 1d (3,3′–carbonyl–bis(chromones), 7h (thiozol–3–yl–2H–chromen–2–ones), 10a (triazolothiadiazin–3–yl 2–H– chromone), 4l (isoquinolones), 3j (quinoline–4–carboxylic acid), 2b (4–quinolone), 6e (2–arylated thiadiazolopyrimidones), 4m (5–perfluoroalkylpyrazoles) and 6a (pyrazole pyrimidones) induced maximum growth inhibition of K–562 cells and exhibited GI50 values: 12.2 ± 1.09, 7.27 ± 0.48, 5.86 ± 0.15, 5.53 ± 0.35, 25.4 ± 1.09, 8.37 ± 0.14, 10.9 ± 1.04, 25.8 ± 2.79, 7.91 ± 0.92, 16.3 ± 1.25, 22.4 ± 1.88 and 16.6 ± 0.04 µM. Compounds 2b (diarylsulphonamides), 4b (1H–pyrazol–4–yl benzamides), 2a (thiazol–2–ylidene–benzamides), 1c (3,3′–carbonyl–bis(chromones), 7i (thiozol– 3–yl–2H–chromen–2–ones), 10g (triazolothiadiazin–3–yl 2H–chromen–2–ones), 4i (isoquinolones), 3b (quinoline–4–carboxylic acid), 2b (4–quinolone), 5e (2–arylated thiadiazolopyrimidones), 4n (5–perfluoroalkylpyrazoles) and 6c (pyrazole pyrimidones) caused significant growth inhibition of HeLa cells and exhibited GI50 values: 4.64 ± 0.34, 8.22± 0.78, 11.5 ± 0.15, 10.1 ± 0.73, 8.37 ± 0.45, 12.9 ± 0.13, 14.3 ± 1.26, 11.5 ± 1.05, 7.65 ± 0.97, 6.13 ± 0.92, 5.79 ± 0.56 and 12.4 ± 0.94 µM, respectively. Cell cycle arrest and apoptosis was confirmed by following the estimation of apoptosis by fluorescence microscopy using two nucleus staining dyes, i.e., DAPI and PI. The compounds exhibiting maximum anticancer potential also induced maximum apoptosis in the respective cell lines. Moreover, the obtained results suggested that untreated cells exhibited the homogenous staining of the nuclei, while the cells treated with different derivatives exhibited nuclear condensation and cell shrinkage along with the membrane blebbing which showed that the treated compounds have induced the cell death of respective cell lines. Furthermore, the mechanism of cytotoxic compound was determined by DNA interaction studies and it was found that the most potent inhibitors exhibited the non–covalent mode of interaction with the herring sperm–DNA (HS–DNA). The mechanism of action of the cytotoxic derivatives against MCF–7 cells suggested that the compound 3b (diarylsulphonamides), 1f (3,3′–carbonyl–bis(chromones), 3a (4–quinolone) and 6i (2–arylated thiadiazolopyrimidones) exhibited maximum inhibitory potential towards MCF–7, also depicted higher DNA interactions having Gibbs free energy Δ–17.48, Δ–17.50, Δ–18.19 and Δ–17.51 KJ/mol. Against the K–562 cells , compounds 4f (1H–pyrazol–4–yl benzamides), 1d (3,3′–carbonyl–bis(chromones), 2b (4–quinolone) and 6a (pyrazole pyrimidones) showed the maximum DNA interactions having Gibbs free energy Δ–17.88, Δ–17.86, Δ–18.09 and Δ–18.31 KJ/mol, respectively. Similarly, against HeLa, 4b (1H–pyrazol–4–yl benzamides), 10g (triazolothiadiazin–3–yl 2H– chromen–2–ones) and 3b (quinoline–4–carboxylic acid) exhibited maximum DNA interactions with Gibbs free energy Δ–17.21, Δ–18.36 and Δ–18.20 KJ/mol, respectively. Results obtained through the present studies revealed that the many of the compounds were potent and selective inhibitors of APs and NPPs with strong anticancer potential can be used as potential leads to synthesize more derivatives that can be beneficial for the treatment of health disorders associated with the over-expression of APs and NPPs. It was further concluded that due to strong inhibitory potential and lower effective concentration against enzymes and cancer cell lines these compounds must be further exploited to explore molecular basis of underlying anticancer mechanisms through in vivo studies for pharmaceutical point of view. Knowledge thus generated will be helpful for the development of future novel drugs." xml:lang="en_US