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Home > Raman Spectroscopy Based Diagnosis of Dengue Virus Infection in Human Blood Serum

Raman Spectroscopy Based Diagnosis of Dengue Virus Infection in Human Blood Serum

Thesis Info

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Author

Khan, Muhammad Bilal

Program

PhD

Institute

Pakistan Institute of Engineering and Applied Sciences

City

Islamabad

Province

Islamabad.

Country

Pakistan

Thesis Completing Year

2018

Thesis Completion Status

Completed

Subject

Physics

Language

English

Link

http://prr.hec.gov.pk/jspui/bitstream/123456789/13070/1/Muhammad_Bilal_Khan_Physics_HSR_2018_PIEAS_20.08.2018.pdf

Added

2021-02-17 19:49:13

Modified

2024-03-24 20:25:49

ARI ID

1676727064640

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Dengue virus (DENV) infection is a mosquito born infectious disease. Its diagnostic is utmost important for treatment, as the symptoms of disease are quite similar to other diseases. Current pathological diagnostics methods available are reverse transcriptase polymerase chain reaction (RT-PCR) and enzyme linked immunosorbent assay (ELISA). RT-PCR is used to detect the virus itself while ELISA is used to detect non-structural protein-1 (NS1) and antibodies like immunoglobulin-M (IgM) and immunoglobulin-G (IgG). Existing methods e.g. virus isolation, RT-PCR and ELISA have certain disadvantages like more time consuming, false-positive/false-negative results and expensive as compared to Raman spectroscopy. Raman spectroscopic technique provides molecular signatures, minimum running cost and online results. Raman spectra of biological samples combined with a suitable statistical data-mining technique like partial least squares (PLS) regression can be used to devise a new method for diagnosis of DENV infection in human blood sera. In present studies, this technique is successfully applied for the diagnostic of DENV infection based on three steps. A graphical user interface (GUI) was specially designed and its code was developed in MATLAB (Mathworks 2009a) programming language to implement PLS for the presented research work. First step: Raman spectra of ELISA confirmed NS1 positive and negative sera samples are discriminated by PLS regression. Analysis of regression coefficients, which differentiate these groups, shows an increasing trend for phosphatidylinositol, ceramide and amide-III, and a decreasing trend for thiocyanate in the DENV infected serum. Second step: Raman spectra of samples, with known value of ELISA based AI of IgM are discriminated by PLS regression. Analysis of regression coefficients revealed that concentration of asparagine, glutamate, galactosamine etc. were found to increase while concentration of fructose, cholesterol, cellobiose, and arabinose were found to decrease with increasing values of antibody index (AI) of IgM. Third step: Raman spectra of samples, with known value of ELISA based AI of IgG are discriminated by PLS regression. Analysis of regression coefficients revealed that myristic acid, coenzyme-A, alanine etc. were found to increase, while amide III, collagen, proteins, fatty acids, phospholipids and fucose were found to decrease with increasing values of AI of IgG. Raman spectroscopy provides not only the diagnosis of DENV infection, but it also enables the detailed insight of the abnormalities appearing in molecular composition of a sample. Importantly, Raman spectra @ 532 nm excitation were used to investigate the possible use of lactate as biomarker for DENV infection. It was found that spectral difference in healthy and infected samples is due to an elevated level of lactate in DENV infected group.
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سلطان کھاروی تے باراںماہ

سلطان کھاروی تے باراں ماہ

رتاں کسے وی علاقے دی رہتل اتے ڈونگھا اثر پوندیاں نیں۔ حیاتی دے پھیر نال رتاں دا پھیر اے۔ بال پن وچ رتاں دا رنگ ہور ہوندا اے تے جوانی وچ رت ہور طراں مانی جاندی اے۔ جد کہ بڈھے وارے ایہو رتاں لنگھ گئیاں رتاں دا ہوکا بن کے جاندیاں نیں۔ غلام یعقوب انورایس صنف بارے لکھدے نیں۔

’’اجیہی نظم جیہدے وچ سال دیاں باراں مہینیاں نوں چت رکھ کے شعر کہے جاون‘‘(۱)

عبدالغفور قریشی لکھدے نیں :

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پنجابی لوک گیتاں تے باراں ماہ دا سانگا ڈھیر پرانا اے۔ ایہہ باقاعدہ کدوں توں لکھیا جان لگیا اے ایس بارے سیانیاں گویڑ لائے نیں۔ سیانیاں نے کیوں جے لکھتی روپ ناں ہوون پاروں دعویٰ نہیں کیتا جاسکدا۔ باراں ماہ دا جیہڑا مواد موجود اے اوس توں ایہہ گویڑ لایا گیا اے۔

’’پنجاب وچ باراں ماہ دی پرنپرا کافی پرانی اے۔ گیارھویں صدی دے مسعود سعد سلیمان لاہوری (1047-1122) دا فارسی باراں ماہ...

نظام الحكم الديمقراطي في فلسفة سبينوزا السياسية

تُعنى هذه الدراسة ببيان نظام الحكم الديمقراطي عند سبينوزا ، والذي له أهمية كبيرة في الفلسفة الحديثة بصورة عامة، والفلسفة السياسية بصورة خاصة ، والذي يصفه سبينوزا بأنه الأفضل من بين أنظمة حكم الدولة الموجودة، وكل ذلك من خلال بيان الفلسفة السياسية عنده ، لتكون الصورة واضحة ومتكاملة، وقد استخدمنا المنهج الوصفي في بيان أفكاره السياسية ، وتتبع هذه الأفكار بصورة تفصيلية، من خلال مقدمة ومجموعة من المحاور وخاتمة ونتائج لهذه الدراسة، والتي توصلنا من خلالها إلى إن ما يدعو إليه سبينوزا من خلال فلسفة السياسية في إدارة الدولة هو النظام الديمقراطي، لأنه أفضل الأنظمة السياسية التي تحقق العدالة والمساواة والحرية للمجتمع ، والطمأنينة والسلام والسعادة للفرد.

Predictive Role of Cyclooxygenase-2 Expression in Her 2 Neu -Erbb2 Amplified Breast Cancer Patients

Worldwide, a major cause of cancer related deaths in females is breast cancer. Aspirin, a member of the NSAID family of drugs has been indicated by several epidemiological studies to lower the risk for breast cancer especially in hormone receptor positive patients. NSAIDs are known to target the cyclooxygenase enzymes. Two isoforms of COX have been described. COX-1 is inherently expressed in most tissues like gastrointestinal tract, kidney, stomach, platelets and is involved in tissue homeostasis. In contrast, COX-2 is stimuli specific and its expression depends on certain extracellular and intracellular stimuli including mitogens, cytokines, tumour proteins, growth factors. COX-2 has been associated with inflammation and carcinogenesis. It has been observed to be overexpressed in many malignant tumours. COX-2 increases the production of prostaglandin, which inhibits apoptosis, promotes angiogenesis, and induces tumour invasion and metastasis. High COX-2 expression is related to the formation of mammary tumours and is associated with parameters of aggressive breast cancer, like advanced tumour size, grade, lymph node metastasis and HER-2 positive status. The purpose of this study was to investigate the prognostic and predictive role of COX-2 in breast cancer. One hundred and fifty breast cancer paraffin embedded tissue specimens were screened. The age of patients ranged between 30 and 73 years their mean was 42.71 ± 9.4. This study results showed that frequencies of ER+/PR+/HER-2+ were (50.71%) followed by ER-/PR-/HER-2+ (12.7%) ER+/PR-/HER-2- (9.3%) and ER+/PR-/HER-2+ (8.0%). Increased frequency of high grade tumour was noted in luminal B and HER-2+ breast cancer patients. In addition, comparison between HER-2/neu gene amplified and non-amplified groups showed that high grade tumours and ER negative status were more common in HER-2 amplified group. Furthermore, same 150 tissue specimens from the breast cancer patients’ and 101 healthy controls (total 251 female participants) were screened for the functionally important COX-2 SNPs rs 689465, rs 689466 and rs 20417 in its promoter region. Analysis of rs689465, rs689466 and rs20417 was performed by PCR-based restriction fragment length polymorphism. In our study none of these polymorphisms were significantly associated with breast cancer in the single locus analysis. These observations are comparable with other studies that have reported no association of these COX-2 SNPs and breast cancer. However, haplotype G 1195 - A1290 - C 765 (GAC) was found to be associated with breast cancer risk (OR2.90, CI 95% 1.37-6.32 p=0.007). It means that polymorphism in regulatory region of COX-2 may interact in combinational manner. Moreover, GAC was significantly associated with tumour size (OR 5.13, 95% CI 1.140-23.13, p=0.033) and HER-2 status (OR 2.018, 95% CI: 1.061-3.831, p=0.032). In this study, we also observed significant correlation among rs20417CC+GC variants, tumour type (IDC) (P=0.03), ER negativity (P=0.016) and HER-2 positivity (P=0.02), however no association between rs689456, rs689466 and histopathological parameters was observed. On the other hand, in the same breast cancer patients group, in 35 (23%) subjects COX-2 expression was observed by immunohistochemistry (IHC), which showed significant association with HER-2 gene amplification (p = 0.028). In addition, we observed strong association of NF-kB, Akt in 35 HER-2 positive and COX-2 positive breast cancer patients. In summary, we investigated predictive and prognostic role of COX-2, and observed that Akt/NF-kB/COX-2 pathway is an important step in the control of cell survival in HER-2 positive tumour. We suggest that cell signaling mechanisms involving AKT/NF-κB/COX-2 that participates in HER-2 driven suppression of apoptosis requires it to be considered when designing drugs for targeting HER-2 positive tumours.