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Syntheses of Pyridine and Pyrimidine Derivatives in Search of Potential Therapeutic Agents

Thesis Info

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Author

Farman Ali

Program

PhD

Institute

University of Karachi

City

Karachi

Province

Sindh

Country

Pakistan

Thesis Completing Year

2018

Thesis Completion Status

Completed

Subject

Chemistry

Language

English

Link

http://prr.hec.gov.pk/jspui/bitstream/123456789/10939/1/Farman%20Ali_Chem_2018_UoK_PRR.pdf

Added

2021-02-17 19:49:13

Modified

2024-03-24 20:25:49

ARI ID

1676727430557

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This research work consists of the syntheses of pyridine and pyrimidine derivatives by adopting various synthetic chemical transformations and screening of their biological activities. All compounds were fully characterized by various spectroscopic techniques such as 1H-NMR, 13C-NMR, EI-MS and HREI-MS. Melting points of all compounds were also recorded. This dissertation consists of two chapters based on the extensive literature and research findings regarding the three libraries of synthetic compounds. Each chapter has its own compounds numbering, tables, figures, schemes and references. Chapter-1 has been subdivided into two parts (part A and B). Part A composed of the broad literature survey regarding the general introduction of pyridine, its biological background and various synthetic protocols. In addition, it also deals with the rationale behind the current study. Fifty-seven synthesized derivatives of pyridine (21-77) were evaluated for their in vitro activities. all derivatives showed more potent inhibition against α-glucosidase in vitro, however, compounds 29, 35, 43, 44, 49, 56, 61, 70, and 75 showed more than hundred-fold better activity than standard acarbose (IC50 = 856.45 ± 5.60 μM). Out of fifty-seven derivatives, only four compounds 28, 30, 42, and 43 showed weak in vitro dipeptidyl peptidase inhibitory activity as compared to standard sitagliptin (IC50 = 0.0246 ± 0.004 µM). Remaining compounds were found to be completely inactive. Compound 38 showed potent antileishmanial activity while compound 22, 39, 40, 41, 46, 49, 55, and 67 showed weak to significant antileishmanial activities when compared with the standards amphotericin B (IC50 = 0.29 ± 0.05 µM) and pentamidine (IC50 = 5.09 ± 0.04 µM). Ten analogs 22, 25, 35, 38, 42, 46, 49, 63, 70, and 75 manifested themselves to be more potent while ten anlogs 31, 33, 36, 37, 39, 41, 45, 57, 73, and 74 showed weak to moderate activity in comparison with standard ibuprofen (IC50 = 11.2 ± 1.9 µM). Four analogs 25, 28, 35, and 49 were attributed to be significantly active while 43 showed moderate activity in comparison with standard rutin. Only compound 64 was observed to be the most potent against tyrosinase enzyme while, derivative 21, 38, and 50 showed moderate to weak tyrosinase inhibitory activity. In Part-B further pyridine derivatives 78-118 were synthesized and screened to check their in vitro biological activities. In vitro β-glucuronidase inhibition of all synthetic derivatives 78-118 were checked which showed that out of forty-one derivatives, twentyeight derivatives were showed more potency as compared to the standard D-saccharic acid 1,4-lactone (IC50 = 48.40 ± 0.25 μM). Among which compound 103 (IC50 = 1.10 ± 0.10 μM) was the most potent compound while compounds 102, 89, 116, 96, 110, and 111 were also the potent about ten to twenty fold better than standard. These derivatives were also evaluated for their urease inhibitory activity. Compound 78, 88, 92, 106, and 116 showed good to moderate potential against urease as compared with the standard thiourea, while remaining derivatives were found to be non-active. Ten Compounds 78, 80, 87, 90, 96, 97, 104, 106, 111, and 115 were showed more antiinflammatory potency than the standard ibuprofen. Out of 98 synthesized derivatives of pyridine, 29 compounds 25, 28, 31, 34, 43, 45, 48, 49, 55, 57, 58, 60, 61, 69, 71, 72, 74, 75, 83, 89, 97, 98, 102, 103, 109, 110, 111, 112, and 116 were new compounds. Chapter 2 describes introduction of pyrimidine, its biological background and various synthetic protocols. In addition, it also deals with the rationale behind the current study. One pot three-component synthesis was adopted to synthesized Dihydropyrimidone derivatives (150-189) and screened for in vitro biological evaluation. Forty synthetic derivatives of dihydropyrimidones were screened for antiinflammatory activity. Six derivatives 151, 157, 160, 162, 166, and 182 were found to be active and showed more significant to less significant activity in the comparison of standard ibuprofen. All of these derivatives were found to be inactive in intiglycation assay and against tyrosinase enzyme. All derivatives were also screened for their in vitro β-glucuronidase inhibitory activity. Among forty analogs, eighteen compounds 157-159, 162-166, 171-178, 181, and 182 were possess more inhibitory potential than the standard D-saccharic acid 1,4lactone (IC50 = 48.4 ± 1.25 μM). In DPPH activity, only one compound 162 is active which is two-fold more potent than the standards BHT (IC50 = 128.2 ± 0.5 µM) and remaining compounds were found to be inactive.
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چوتھا حصہ : بولیاں

بولیاں
(۱)
باہجوں رب دے نہیں تیرا اے ٹھکانہ، دشمن مارے بولیاں
(۲)
جٹی بنھ کے لاچا لمکاوے، گُت نالوں ڈباں لمیاں
(۳)
پئی داتری چھنا چھن وجدی، جٹی ہن واڈھی کردی
(۴)
ہتھ نازک پھلاں توں وھ کے، داتری دے وس پے گئے
(۵)
جٹی آکے ڈائیوو وچ بہہ گئی، موٹر وے آباد ہو گیا
(۶)
پنڈ دکھاں دی پھراں پیا چا کے، ساتھی میرا کوئی نہیں لبھدا
(۷)
پنڈ دکھاں دی سرے اتے چا کے، وڈا میں روگی ہو گیا
(۸)
پنڈ دکھاں دی میں سٹ نہیں سکدا، وخت وچ پے گئی جندڑی
(۹)
پنڈ دکھاں دی نے کنی اے تروڑی، ساہ تاں کڈھانویں سجناں
(۱۰)
دکھاں نال میں سیتا تے پرویا، دکھاں والی پنڈ چا کے

(۱۱)
جٹی ٹوول دے کھاڈے وچ بہ گئی، بجلی شڑنگ کر گئی
(۱۲)
ونگاں ٹٹیاں بنے اتے ساگ دے، پیر نوں مروڑا آگیا
(۱۳)
تینوں نیندراں نے آن ستایا، اسیں آئے گپ شپ نوں
(۱۴)
جیویں باجرے دے سٹے نیں نروئے، انج دی جوانی یار دی
(۱۵)
چھلی دودھیا مکئی جیویں ابھری، یار تے جوانی آگئی
(۱۶)
کڑیاں ایہہ نیں لاہور وچوں آئیاں، ٹردیاں چھم کر کے
(۱۷)
جان پئی وچ ہجر فراقاں، جدوں دا سوہنا یار رسیا
(۱۸)
کڑیاں ایہہ نیں لاہور وچوں آئیاں، سر تے دوپٹہ کوئی ناں
(۱۹)
جان لُٹی گئی وچ ہجر فراقاں، جدوں دا اے یار رسیا
(۲۰)
تینوں واسطہ ای بانہہ نہ مروڑیں، رت ڈلھ ڈلھ جاونی

(۲۱)
چھڈ دنیا دے یار پواڑے، دنیا چند دن دی
(۲۲)
سارے ٹریکٹر ٹرالیاں نے تیرے، میں مٹھ ساگ بھننا
(۲۳)
ساری رات وچ گئی اے اڈیکاں، سرگی دا ویلا ہو گیا
(۲۴)
وعدے کر کے تے یار نہیوں آیا، ہتھاں وچ پھل سک گئے
(۲۵)
آئیاں تیریاں نہ اجے تشریفاں، سرواں دے پھل کھڑ پئے
(۲۶)
پھل کھڑے...

الأسس الفلسفية لأسلوب الحياة الإسلامية وغير الإسلامية وأثرها فى المجتمع: دراسة مقارنة

Philosophical Foundations of Islamic and Un-Islamic Pattern of Life and its Impact upon Society: A Comparative Study It is self-evident that human beliefs had great influence on character, actions, ethics, behavior and way of life. The possessors of correct belief produced positive effects and those who possessed incorrect belief promoted negative values in the community. Undoubtedly, the diversity in belief produced diverse ethics, actions, behaviour which gave birth to the different patterns of life in society. Regardless of subdivisions, by looking towards the philosophical foundations, these patterns of life could be divided into four categories in the light of the Qur’an and Sunnah. These lifestyles (also mentioned by Abū ’l-A‘lā Maudūdī in Tajdīd wa Iḥyā-i Dīn) are: Atheistic pattern of life, Polytheistic pattern of life, Monastic pattern of life and Islamic pattern of life. As each pattern had its particular tenets, therefore it formed a particular way of life by leaving its effects upon individual, social, political, economic, cultural and civilizational life. This research work aimed to explain the basic mechanism of these four patterns and their impact on human life. The method used for the collection and analysis of data was descriptive and analytical. The research concluded that three patterns of life (except Islamic pattern of life) produced harmful and negative effects into the society whereas the only Islamic pattern of life ensured the peace and prosperity. Moreover, Islamic pattern of life played a vital role in growth of all disciplines including political social, and economic system. It is therefore suggested that Islamic scholars should uncover the hollowness of Un-Islamic life style and present Islamic pattern of life in logical and systematic way. On one hand, this exercise will encounter the evils and on the other hand would promote good into the society.

Modeling Multivariate Biomedical Data

The study addresses the significance of biomedical data to be analyzed by Statistical Community in collaboration with the expertise of personnel in the biomedical field. The data has its own particular constraints and difficulties being privacy-sensitive, heterogeneous and voluminous data. The mathematical understanding of patterns and structures and estimation procedures may be fundamentally different from those of data collected in other fields. For the purpose complicated genomic data of leukemia cancer type of Golub et al (1999) is selected for the study. This dataset comes from a study of gene expression in two types of acute leukemia’s, acute lymphoblastic leukemia (ALL) and acute myeloid leukemia (AML). The training data set consisted of 38 bone marrow samples, 27 of which were taken from ALL patients (19 B-ALL and 8 T-ALL) and 11 of which were taken from AML patients. Each gene expression is the quantitative level of messenger RNA found in the cells. Understanding the genetic underpinnings of disease is important for screening, treatment, drug development, and basic biological insight. Thus exploring genomic data has drawn on mathematical, statistical, and computational methods to discover meaningful genetic relationships from large-scale measurements of genes. Since this is a continuously growing area and is constantly being seeded with new approaches and interpretations. Most of this new material is easily accessible given a familiarity with basic genetics and multivariate statistics. The application of multivariate techniques need a thorough study of the data in hand and the primary objective in the study has been to “let the data speak for itself”. For the proper interpretation of these data, experimental and computational genomics need to have a firm grasp of statistical methodology. An aspect of prime importance, keenly taken into consideration in the 1study. For the multivariate genomic data of leukemia cancer type an initial exploratory data analysis has been performed in the study with the graphical tools of Histograms and Box plots in conjunction with one another. This has exposed that such a data set has a thorough fit for the extreme value distributions, which apart for the study undertaken has not been found in literature for the data type. The fitting of extreme value distributions has opened many new avenues for the data type for the new researchers to work on. Another output of the exploratory data analysis is the application of an appropriate transformation (the classical Box Cox transformation) to deal with the sharp skewness the data, and not relying only on the traditionally used logarithmic transformation. The appropriate data transformation has been another high point in the application of PCA for visualizing clusters present in the data set. Previously PCA and other complicated techniques like SOM and SVM has been applied and new adaptations are continuously being tried on these apart from the traditional clustering methodologies. Here the focus has not been just on the application of multivariate techniques to locate the clusters as predefined by the biological knowledge, rather it is on the methodologically simple yet most appropriate technique to be applied after a thorough look into the interior of the data set. Thus the data set revealed a patterned correlation matrix which in itself explained the number and configuration of clusters. This provided a groundwork for the application of PCA on box cox transformed data using the patterned correlation matrix as the interrelationship matrix. Indeed a comparison has been made with other interrelationship matrices as well. The clear cluster structure presented was, with no any misclassification in the configuration of clusters and exactly coincided with the prior biological knowledge. Therefore as per our hopes this introduction to prototypical methods for 2studying the data and interpreting in the context of biological genomic knowledge has been successful to get started. Addressing the next immediate issue in the study of the biomedical genomic data was finding genes that may be specific for one leukemia type or the cluster. The initial exploratory data analysis exposed certain data values that were of prime biological significance and played statistically significant role in the specification of genes for each cluster defined or the leukemia type. Resultantly a criterion developed from the data set, classifying each gene into its specific single cluster, or two of the three clusters or in all of the three clusters (the common genes).Thus a classified data set of the most variant genes across all the samples was taken as a training data set. Based on the classified grouping a linear discriminant analysis was successfully performed to find the discriminating genes for the specific leukemia type with 99.97% probability of correct classification. The collections of the discriminating genes from the three clusters formed were then needed to be checked for the previously found externally valid cluster structure. PCA was then applied in a new dimension as a check for the discriminating genes. For the discriminating genes the cluster formed for the sample expression profiles were expected to be distinctively clear for the genes to term as a leukemia type specific or cluster specific. Thus the clusters formed were very clearly distinguishable from one and other in contrast to the clusters of the sample expression profiles comprising of the common genes in all. These presented no any distinctive cluster rather a big bulk of a cluster that did not showed any difference in the biologically different leukemia types. The two major issues of the biomedical genomic data have been addressed successfully with an appropriate proposed model for the data type. Thus the study has been based on methodologically simple yet appropriate statistical techniques for such a data type filling 3the inevitable space left in for a statistical community the Pakistani statistical community for the very first time for such a internationally important field, the genomic biomedical field. With the results being unequivocal: Simplest is best! Can cluster genes, cell samples, or both. Yet the study has explored many new dimensions that need to be explored to establish relationship between an experiment based leukemia class and its subclass and a clinical out come. Since the data has many dimensions and concentrating on few precisely has been a difficult task yet accomplished.