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Synthesis and Structure-Activity Relationship Studies of Some New Molecules Encompassing Thiazole Core

Thesis Info

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Author

Ramzan, Muhammad Shahid

Program

PhD

Institute

Government College University

City

Lahore

Province

Punjab

Country

Pakistan

Thesis Completing Year

2019

Thesis Completion Status

Completed

Subject

Chemistry

Language

English

Link

http://prr.hec.gov.pk/jspui/bitstream/123456789/10377/1/Muhammad%20Shahid%20Ramzan_Chem_2019_GCU%28L%29_PRR.pdf

Added

2021-02-17 19:49:13

Modified

2024-03-24 20:25:49

ARI ID

1676727475386

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The Chemistry and biological studies of heterocyclic compounds has been important field for a long time in Medicinal Chemistry. It is a fundamental need for the development of new drugs having potent activities. The discovery of new drug candidates has been the burning issue of all the times owing to new emerging diseases. Synthetic and natural heterocyclic compounds are the subject of R & D units of many pharmacological, agrochemical and industrial laboratories. Around 90% of new medications contain heterocyclic moieties. The presented work is a contribution in the field of pharmaceutical industry regarding the discovery of new drug candidates. The amalgamation of two heterocyclic moieties i.e. 1,3-thiazole and 1,3,4-oxadiazole, were carried out in the designed molecules to impart them possible therapeutic properties. The new compounds have been synthesized by encompassing different bioactive moieties including 1,3-thiazole, 1,3,4-oxadiazole, alkyl halide, Acetamide and propanamide. The synthesized molecules have been subjected to evaluation of their antibacterial, enzyme inhibitionand hemolytic potential. Furthermore, enzyme inhibition potential results have been supported by computational docking in order to find the types of interactions with the active site of involved enzymes. Six (06) schemes have been used to demonstrate the synthesis of ninety (90) compounds. In Scheme-1, 1,3-thiazole-2-amine (1) wasstirred with 2-bromoacetyl bromide (2) in basic medium to yieldN-(1,3-thiazol-2-yl)-2-bromoacetamide (3) as an electrophiles. In a parallel reaction different 5-substituted-1,3,4-oxadiazol (7a-o) were synthesized from corresponding aryl carboxylic acids (4a-o) through esterification and hydrazide formation. The final compounds, 8a-o, were synthesized by stirring 7a-o and 3 in an aprotic polar solvent. In Scheme-2, the synthesis was initiated by the reaction of 4-methyl-1,3-thiazol-2-amine (9) with bromoacetyl bromide (2) in aqueous basic medium to obtain an electrophile,2-bromo-N-(4-methyl-1,3-thiazol-2-yl)acetamide (10). In parallel reactions, a series of carboxylic acids, 4a-o, was converted, through a sequence of three steps, into respective 1,3,4-oxadiazole heterocyclic cores, 7a-o, to utilize as nucleophiles. Finally, a series of compound, 11a-o, was synthesized by coupling 7a-o, individually, with 10 in an aprotic polar solvent. In Scheme-3, firstly, an electrophile, 2-bromo-N- XII (5-methyl-1,3-thiazol-2-yl)acetamide (13), was synthesized by the reaction of 5-methyl-1,3-thiazol-2-amine (12) and bromoacetyl bromide (2) in an aqueous medium. Then, the electrophile 13 was coupled with the aforementioned1,3,4-oxadiazoles (7a-o)to obtain the targeted bi-heterocycles (14a-o). In Scheme-4, the synthesis was initiated by the conversion of ethyl 2-(2-amino-1,3-thiazol-4-yl)acetate (15) to corresponding 2-(2-amino-1,3-thiazol-4-yl)acetohydrazide (16) by the reaction with hydrazine hydrate in methanol. The treatment of acid hydrazide, 16, with carbon disulfide gave a bi-heterocyclic 5-[(2-amino-1,3-thiazol-4-yl)methyl]-1,3,4-oxadiazole-2-thiol (17). The target compounds, 19a-o, were synthesized by stirring the parent 17 with different electrophiles, 18a-o, in DMF using LiH as weak base and activator. In Scheme-5, the synthesis of a new series of S-substituted derivatives, 23a-o, of 5-[(2-amino-1,3-thiazol-4-yl)methyl]-1,3,4-oxadiazol-2-thiol (17) were synthesized and evaluated for enzyme inhibition study along with cytotoxic behavior. Different electrophiles, 22a-o, was synthesized by the reaction of aniline (20a-o) and 2-bromoacetyl bromide (21) in an aqueous medium. The target compounds were synthesized by stirring 17 with different electrophiles, 22a-o, in DMF using LiH as weak base and activator.In Scheme-6, the synthesis of a novel series of bi-heterocycles, 26a-o, was accomplished by S-substitution of 5-(2-amino-1,3-thiazol-4-yl)methyl)-1,3,4-oxadiazol-2-thiol (17). A series of electrophiles, 25a-o, were synthesized by stirring primary amines (20a-o) with 3-bromopropanoyl chloride (24) in a basic aqueous medium. The target compounds, 26a-o, were synthesized by stirring 17 with synthesized electrophiles, 25a-o, in DMF using LiH as a weak base and activator. The synthesized compounds were initially confirmed through thin layer chromatography (TLC) and then finally corroborated through spectral data of IR (Infra Red), 1H-NMR (Proton Nuclear Magnetic Resonance), 13C-NMR (Carbon-13 Nuclear Magnetic Resonance) and EIMS (Electron Impact Mass Spectrometry). Some spectra are also given for structural elucidation in the discussion section of chapter 4. The physical datalike color, state, yield, melting point (not for sticky solids), molecular formula and molecular mass of all the synthesized compounds also have been provided. Four enzymes, namely, acetylcholinesterase (AChE), butyrylcholinesterase (BChE), α-Glucosidase and urease were used to establish the structure-activity relationship of all these synthesized bi-heterocyclic compounds. The antibacterial potential against different bacterial strains was conducted through thedisc diffusion method. Activity through diffusion method was compared with XIII Ampicillin. Doxorubicin was used as astandard to find out cytotoxicity of these synthesized compounds by killing brime shrimps at different concentration. All synthesized derivatives were computationally docked against AChE, BChE α-glucosidase, and urease to explore the binding modes of the ligands. Among the synthesized ninety (90) compounds, various compounds have shown pharmacological activity potential. The structure-activity relationship (SAR) of these synthesized compounds has been elaborated in chapter 4 under the discussion section. The most potent antibacterial agents and enzyme inhibitors with less toxicity might be subjected to in vivo study for further analysis as drug candidates. These compounds might be considered for the pharmacological industries as new drug candidates for a drug discovery program.
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نسیم سخن اور صاحبِ کتاب

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حافظ محمد اکرم راشدؔ سے میرے دیرینہ اور دیر پا تعلقات ہیں ، یہ ایک علمی خاندان سے تعلق رکھتے ہیں۔ اِن کے بزرگوں کے دینِ اسلام کے میدان میں لگائے ہوئے شجر سایہ دار مسحور کن ماحول پیش کر رہے ہیں اور تشنگانِ علم کی پیاس بجھانے کے لیے دورانِ سفر طلباء کے راستے میں آنے والی جہالت اور کم علمی کی تپش اور دھوپ کو رفع کرنے میں مثالی کردار ادا کر رہے ہیں ۔ میں نے صرف کتاب اور صاحبِ کتاب کے بارے میں چند سطور ضبط تحریر میں لانے کے لیے اپنے قلم کو اذنِ خرام دینا ہے ۔موصوف قلم کے میدان کے شاہسوار ہیں ، ندائے حق کی ادارت ہو، منظور العارفین کی تدوین ہو ، یا منظورالعارفین ٹرسٹ کا قیام ہو، موصوف پیش پیش نظر آتے ہیں ،آپ ہمارے ادارے منظور العارفین ٹرسٹ کے ساتھ قلب و اذہان کی جملہ قویٰ کے ساتھ وابستہ رہے ہیں ۔ مُرور ایّام کے ساتھ پیرانہ سالی اور ضعف کا شکار ہو کر کچھ عرصہ سے گوشہ نشین ہیں تاہم تحریر سے عشق کی حد تک لگائو کی بنا پر کوئی نہ کوئی شاہ پارہ تخلیق کرتے رہتے ہیں ۔ آپ کالم نویس ہونے کے ساتھ ساتھ ایک عظیم خوش نویس بھی ہیں عارفوالااور اس کے مضافات میں خطاطی کے حوالے سے ان کا ایک نام ہے ۔ دنیوی اور دینی تعلیم کے امتزاج کے حامل ہیں اور اپنی ایک شناخت رکھتے ہیں ۔ سرکاری ادارہ میں رئیس مدرسہ کے فرائض سر انجام دے چکے ہیں ۔
مذہبی خدمات کے حوالے سے اِن کی خدمات مہر نیم روز کی طرح واضح ہیں ۔ مرکزی جامع مسجد -N بلاک عارفوالا کی امامت اور خطابت کے فرائض بحسن و خوبی سر انجام دے رہے ہیں۔صاحب ورع اور تقویٰ ہونا اِن کی...

Privacy in Islam: A Sacred Human Right

‘Right to Privacy’ or the’ Privacy of an individual’ is considered as the most important and the most basic of all the fundamental rights and liberties. It is the concern of all legal systems, civilizations, cultures and religions. In the modern Western and legal perspectives, the right to privacy has emerged from the concept of right to life, which is considered as the basic right from which all the other rights are derived. Islam, on the other hand, considers as an independent and separate human right. The present study is an attempt to briefly reflect and accumulate all the aspects and dimensions of the Privacy right in Islam. It is mainly concerned with the privacy of one’s home, confidential correspondence investigating someone’s financial, private and family affairs, and other such violations, Its punishment prescribed by Islam and its implications on an human society, arising out of doubts, suspicions, accusations and mistrust, in the teachings of Quran and Sunnah of the Messenger ﷺ in particular and of the Islamic jurists in general.

Molecular Genetic Analysis of Autosomal Recessive Primary Microcephaly and Eye Disorders in Pakistani Kindreds

The main objective of the present investigation is to understand the molecular genetics of autosomal recessive genetic disorders in the Pakistani population by studying primary microcephaly and certain eye disorders i-e primary congenital aphakia, primary congenital glaucoma and retinitis pigmentosa. Autosomal recessive primary microcephaly (MCPH) is a neuro-developmental congenital disorder in which the affected individuals have significantly reduced brain size (occipitofrontal head circumference at least -4SD) accompanied with mild to moderate intellectual impairment. Though MCPH has a single clinical phenotype, it is a genetically heterogeneous disorder with seven loci reported to date (MCPH1 through MCPH7). Twenty MCPH families (designated as MCP) were ascertained from various regions of Pakistan. Linkage analysis was performed for all the families as a result of which five families established linkage to MCPH2, one family to MCPH4, eight families were found linked to MCPH5, two families to MCPH6, four families were found unlinked to any of the reported locus, one of which was later found linked to the seventh locus MCPH7. Since the underlying genes have not yet been identified for both MCPH2 and MCPH4, candidate gene approach was used to find the gene responsible. Six potential candidate genes (MAG, SIRT2, ZNF302, ZNF599, CHST8 and SNX26) were sequenced for MCPH2 linked families and nine genes (BUB1B, CHAC1, CHP, COPS2, FGF7, NUSAP1, PAK6, RHOV and TYRO3) were selected and sequenced for the MCPH4 locus, which did not reveal any pathogenic mutation. Since sequencing all the candidate genes for both these loci was beyond the scope of this study, the high-throughput sequencing facility was then used to sequence the candidate regions coupled with DNA capture experiments to capture only the regions of interest rather than sequencing the entire genome. XIIIEight families linked to MCPH5 which is the most common locus responsible for MCPH. Mutation screening of the underlying gene ASPM in these families revealed 4 novel and 3 known mutations. The novel mutations identified in the present study are, c.9677_9678insG, c.2938C>T, c.9595A>T and c.7894C>T, all leading to a premature stop codon. Four families linked to this locus shared three known mutations (c.8508_8509delGA, c.3978G>A and c.9730C>T) which have already been reported. Two families (MCP10 and MCP26) established linkage to MCPH6, whose gene is CENPJ. Extensive bi-directional sequencing of all the coding exons as well as exon- intron boundaries did not revealed any pathogenic mutation. Four MCPH families (MCP12, MCP23, MCP30 and MCP33) were initially found unlinked to any of the known loci, and subjected to homozygosity mapping by using SNP 6.0 array. Large homozygous regions were identified across the genome which will be further narrowed down to obtain the minimum critical regions. By the discovery of the seventh locus (MPCH7), MCP12 was found to have linkage to the MCPH7 locus with the underlying gene STIL. Bi-directional sequencing of all the coding exons of STIL has not revealed any mutation. Molecular genetic analyses of autosomal recessive eye disorders comprise the second part of this dissertation. Eye disorders could either present as isolated entity or combined with other phenotypes to have a syndromic manifestation. Inherited eye disorders are genetically heterogeneous as they have a wide range of phenotypic outcome. Family CT-1 was diagnosed to have primary congenital aphakia wih complete absence of lens. Initially, screening for all thirteen autosomal recessive cataract loci was done, to rule out surgical cataract removal, but the family was found linked to 1p34.3-p32.2 XIVharboring the gene FOXE3 which is responsible for causing aphakia. Sequence analysis revealed a nonsense mutation c.720C>A, changing cysteine 240 to a stop codon (p.Cys240X). The mutation was counter confirmed using a restriction enzyme DdeI. Since this mutation has already been reported in a family from Madagascar, haplotype analysis was done for both families which ruled out the ancestral origin of the mutation. Family RP5 had the clinical diagnosis of primary congenital glaucoma with secondary cataract. CYP1B1 is the candidate gene for this phenotype, whose sequence analysis revealed a novel frameshift mutation 862insdelG>CC (p.A288fsX326). This frameshift mutation leads to a premature stop codon truncation 38 amino acids downstream. Families RP6 and RP7, initially diagnosed as early-onset blindness, were subjected to SNP 6.0 array for homozygosity mapping to identify homozygous regions. Analysis of RP6 family is still underway. However in family RP7, by combining the SNP 6.0 data and marker analysis, a reported nonsense mutation (p.W278X) was found in the gene AIPL1, known to be responsible for causing Leber Congenital Amaurosis. The work presented in this thesis has been published in the following articles: 1. Aujum I, Eiberg H, Baig SM, Tommerup N, Hansen L (2010). A mutation in the FOXE3 gene causes congenital primary aphakia in an autosomal recessive consanguineous Pakistani family. Mol Vis 16:549-555. 2. Muhammad F, Mahmood Baig SM, Hansen L, Hussain MS, Anjum I, Aslam M, Qureshi JA, Toilat M, Kirst E, Wajid M, Nurnberg P, Eiberg H, Tommerup N, and Kjaer KW (2009). Compound heterozygous ASPM mutations in Pakistani MCPH families. Am J Med Genet A 149A (5): 926-30.