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Antimicrobial Resistance and Genotyping of Extended Spectrum Beta-Lactamase Producing Clinical Isolates

Thesis Info

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Author

Fatima, Sakina

Program

PhD

Institute

University of Karachi

City

Karachi

Province

Sindh

Country

Pakistan

Thesis Completing Year

2018

Thesis Completion Status

Completed

Subject

Biological & Medical Sciences

Language

English

Link

http://prr.hec.gov.pk/jspui/bitstream/123456789/10788/1/Sakina%20Fatima_Pharmaceutics_2018_UoK_PRR.pdf

Added

2021-02-17 19:49:13

Modified

2024-03-24 20:25:49

ARI ID

1676725513538

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The development of resistance mechanism in Gram-Negative bacteria is growing all over the world affecting developing countries the most. Extended Spectrum Beta-lactamase (ESBLs) production is one of the widespread mechanisms of resistance associated with irrational or excessive use of extended spectrum cephalosporins. The ground objective of this study was to investigate the prescribing pattern of broad spectrum antibiotics in hospital setup and the prevalence of ESBL production in Gram-Negative clinical isolates collected from an outpatient source by both phenotypic and genotypic detection. The study also focused on the treatment options available to treat resistant clinical isolates of Escherichia coli, Klebsiella pneumoniae, Pseudomonas aeruginosa and Proteus mirabilis. Total 685 in-patient data were collected over a period of three months for the prescribing patterns of extended spectrum antibiotics used alone or in combination. The data were analyzed for the utilization of extended spectrum antibiotics in various wards either empiric or prophylactic use of broad spectrum cephalosporins. For the prevalence of ESBL production, 1005 clinical isolates of E. coli, K. pneumoniae, P. aeruginosa and P. mirabilis were collected from an out-patient source. Antimicrobial susceptibility and resistance patterns were determined by Kirby-Bauer disc diffusion method under the recommended guidelines of Clinical Laboratory Standard Institute (CLSI). Phenotypic detection of ESBL was performed on 352 clinical isolates using the double disc synergy test between amoxicillin/clavulanic acid (10μg) and ceftazidime or cefotaxime (30μg) disc. Multidrug resistance among ESBL positive isolates was also determined. Pearson’s or Fisher’s exact Chi-square test was used to analyze statistical association between ESBLs and Non ESBLs at 0.05 level of significance. Furthermore, polymerase chain reaction was used for the identification of TEM, SHV and CTX-M gene in ESBL positive clinical isolates. The prescribing pattern in hospital setup revealed that 75% of the overall antibiotics were prescribed for prophylactic treatments, whereas, among all prescribed antibiotics the frequency of broad spectrum cephalosporins alone or in combination was found to be the highest. Out of 1005 gram-negative clinical isolates, prevalence was found to be E. coli 680 (67.66 %), K. pneumoniae 248 (24.67%), P. mirabilis 3 (0.3 %) and P. aeruginosa XIII 74 (7.36%). Out of 352 clinical isolates, 96 (27.27%) were ESBL positive, female preponderance was found in 62 (67%), whereas 32 (33%) were males. E. coli was the most prevalent ESBL producers 79 (82%), followed by K. pneumoniae 16 (17%) and P. mirabilis 1 (1%). The urinary tract infections were the most commonly recovered infections i.e., 72 (75%), and among them 63 and 9 were E. coli and K. pneumoniae respectively. Age groups of 16-30 and 46-60 years were most affected with ESBL producing uropathogenic E. coli with a high prevalence in females. A high rate of resistance was observed against broad spectrum cephalosporins, fluoroquinolones, amoxicillin/clavulanic acid, sulfamethoxazole/trimethoprim and ampicillin. Whereas, amikacin, imipenem, tazobactam/piperacillin and fosfomycin were found effective antibiotic choices. The rate of multidrug-resistance was found to be 95%, 62.5% and 100% in ESBL producing E. coli, K. pneumoniae and P. mirabilis respectively. Statistical evaluation between ESBLs and Non ESBLs revealed significant association in E. coli (p 0.0004) and K. pneumoniae (p 0.032). Genotype identification revealed the presence of TEM, SHV and CTX-M genes in 82.14% (69/84) of the isolates. CTX-M was the most prevalent gene found in 59.5% (50/84) of the isolates, followed by TEM 41.6% (35/84) and SHV 13% (11/84). CTX-M was dominant among uropathogenic E. coli related to community acquired urinary tract infections. The study concluded an increased prevalence rate of ESBLs in E. coli, most of them recovered from urinary tract infections. The study also found an increased rate of multidrug-resistance among Gram-Negative clinical isolates. These incidences can be reduced by the restricted use of broad spectrum cephalosporins. The spread of ESBL producing uropathogenic E. coli can be controlled by implementing ESBL screening along with limiting the use of empiric therapy. Nevertheless, hygienic practices must be employed to reduce the incidence of community onset urinary tract infections.
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تندرستی ہزار نعمت ہے

تندرستی ہزار نعمت ہے
اللہ تعالیٰ نے بنی نوع انسان کی تخلیق فرمائی تو اس کو بے شمار نعمتوں سے سرفراز فرمایا۔ دیکھنے کے لیے آنکھیں، سننے کے لیے کان، بولنے کے لیے زبان، چکھنے کے لیے قوت ذائقہ، سونگھنے کے لیے قوت، چلنے کے لیے قوت، سوچنے کے لیے قوت، غور وفکر کے لیے قوت یعنی انسان کوقوائے جسمانی کی صورت میں انعاماتِ ربانی وافر مقدار میں میسر آئے۔
قرآنِ پاک میں ارشادِ باری تعالیٰ ہے کہ اگر اللہ تعالیٰ کی نعمتوں کا شمار کرنا چاہو تو تم ان کو گنتی میں نہیں لا سکتے ہو، ان بے شمار نعمتوں کا درود بنی نوع انسان کے لیے ہوا ہے اور انسان وہ ہے جو جسم اور روح کا مرکب ہے اگر انسان صحت مند ہے تو یہ جملہ انعامات ِربانی اس کے لیے نعمت غیر مترقبہ ہیں اور اگر مرد بیمار ہے تو وہ ہر نعمت سے بیگانہ ہے، ہر نعمت اس کے لیے غیر مفید ہے، ہر نعمت اس کے لیے نعمت نہیں بلکہ زحمت ہے، ہر نعمت کا وجود اس کے لیے غیرمحمود ہے۔
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صحت مند انسان معاشرے کا اہم رکن ہوتا ہے۔ گھر کے لیے ، خاندان کے لیے اس کا وجودکسی نعمت سے کم نہیں ہوتا، اس کی نشست و برخاست معیاری ہوتی ہے، وہ حسن وزیبائش کا مرقع ہوتا ہے، وہ...

Analisis Faktor Determinan Pengungkapan Sustainability Report (Studi Empiris pada Perusahaan yang Terdaftar dalam Indeks LQ–45 Tahun 2019 – 2022)

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Effects of Solvents on the Reduction of Methylene Green

The photo reduction of methylene green (MG+) with ethylene diammine tetra acetic acid (EDTA) in aqueous alkaline and aqueous alkaline miscible organic solvent was carried out spectrophotometrically by visible light. Reaction was followed by change in optical density of methylene green with time course. It was observed that change in solvent showed no significant change in wavelength but change in optical density showed the effect of solvent on dye reduction process. Therefore reaction was followed at λmax 658 nm. The influence of operational parameters, such as dye concentration, reductant concentration, change in pH, change in solvent composition, and change in ionic strength at different temperature revealed that these parameters strongly influence the decoloration of the dye. The apparent rate of decoloration was calculated from observed absorption data on the kinetics of bleaching of dye, showed that reaction follows pseudo first order kinetics. EDTA was found to be an effective reducing agent for the photo reduction of methylene green in aerobic condition. Consumption of EDTA in the reduction of methylene green leads to conclude that it is oxidized. This is an unexpected result since EDTA does not normally function as a reducing agent. The nitrogen containing chelating agents with secondary or tertiary nitrogen behaved, as electron donors in photochemical reduction of dye. H+/ 2e- + MG + EDTA MGH alkali Results showed that dye reduction process depend upon the concentration of EDTA and alkali where as it was independent upon the dye concentration. The salting agent KNO3 has been found to decline overall rate of reduction of methylene green with EDTA in aqueous medium as well as in mixed solvent system. Detailed kinetics and thermodynamics aspects have been discussed in relevant section of discussion to realize the interaction between methylene green and EDTA. Regeneration of color was observed upon turning off source of light. Effect of increasing concentration (10-30%) of water 1 miscible organic solvent (methanol and ethanol) on dye decoloration showed that rate of reaction increase as the dielectric constant of water decreases. Spectral intensities of dye in binary solvent mixture of different composition showed the dominating character of aqueous medium with no remarkable difference in values of λmax. This may be attributed to the similar reaction of H+ ion abstraction from reductant in mixed solvent system as in aqueous medium. During the course of study of the kinetics of reduction of methylene green, it was found that mixed solvent medium results in pronounced enhancement of rate in EDTA and at alkaline pH while in case of methylene green the following order was observed H2O > Methanol > Ethanol. An attempt has been made to give an explanation of imperative role of dielectric constant of the medium taking into consideration of single sphere and double sphere complex in reaction mixture. Our study revealed that single sphere complex was found to be most suitable complex existed in the mixed organic solvent with dye and reductant. In presence of alkali and nitrate ion concentration the values of single sphere complex model were not coinciding with the values obtained theoretically in mixed solvent system. Therefore HPLC analysis was carried out to check the dye molecule degraded or not. HPLC analysis suggested that a significant amount of the dye degrade in presence of nitrate ion and alkali and additional peaks which may be off by product were produced. This leads to confirm the non identical values of single sphere and double sphere model in presence of nitrate and alkali. Rate of removal of color showed a linear relationship with respect to water content below 30% and temperature between 20- 40 oC where as increase in concentration of organic solvent showed the inhibition of dye decoloration at given optimum condition. Therefore study was restricted up to 30% of methanol/ ethanol binary mixtures.