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Machine Vision Approach in the Classification of Breast Cancer Using Texture Analysis

Thesis Info

Access Option

External Link

Author

Shahid, Muhammad

Program

PhD

Institute

The Islamia University of Bahawalpur

City

Bahawalpur

Province

Punjab

Country

Pakistan

Thesis Completing Year

2015

Thesis Completion Status

Completed

Subject

Physics

Language

English

Link

http://prr.hec.gov.pk/jspui/bitstream/123456789/13547/1/FINAL%20AND%20CORRECTED%20VERSION%20OF%20THESIS.pdf

Added

2021-02-17 19:49:13

Modified

2024-03-24 20:25:49

ARI ID

1676726595614

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The main objective of this research is to develop a diagnostic system, based on standard or objective parameters rather than non-standard or subjective parameters, which are already being employed by radiologists, for the classification of abnormalities present in mammograms, as benign or malignant. Radiologists differentiate biological behavior of these abnormalities on the basis of visual parameters such as size, shape and boundaries of the tumors. A benign tumor has small size, well-defined margins and homogenous texture, whereas, a malignant tumor typically has larger size, poorly margined and heterogeneous texture. Due to the limitations of human perception all these parameters become subjective, which cause a high risk of misinterpretation, inter and intra- observer variation, for correct decision. Considering all these factors, development of a compact system is required; (i) to accurately classify malignant and benign abnormalities within a reasonable time and cost, (ii) to increase diagnostic consistency by providing an objective (rather than subjective) evaluation. To meet the objectives a CAD system has been developed and employed on two types of data; (a) test data and (b) experimental data. In test data, five wheat varieties are differentiated by this system. For this purpose five types of 77 statistical textural features, which may be grouped as; first order (histogram) features, second order (GLCM) features, higher order (GLRM) features, autoregressive features, and gradient matrix based features are calculated from ROIs (8x8) (16x16) (32x32), and (64x64) under, μ±3σ and 1-99% normalization conditions by using MaZda software. The most relevant features for each size of ROI are selected by three approaches; Fisher’s Co-efficient, Probability of Error plus Average Correlation Co-efficient, and Mutual Information Co-efficient. In this way the most relevant 10 features are selected by each method. We received very poor results when data analysis capability is verified on the basis of 10 features selected by each method for each size of ROI except (64x64), by three multivariate techniques; PCA, LDA, and NDA under both normalization conditions, by a software „B11‟, integrated with MaZda.To improve the results, a set of 19 features is obtained by merging the features selected by each approach. An excellent clustering result with an accuracy of 99.67% is received, when data of these 19 features extracted from ROI (64x64) under 1-99% normalization, is deployed to NDA projection space. By using supervised classification approach, artificial neural network (ANN) the system is trained and tested on the basis of 70% and 30% of input data respectively. We received an accuracy of 99.90% and 93.11% in training and testing phase respectively. On the basis of results for test data analysis, it is concluded that the proposed CAD system produces the best result for large ROI window size when a combined set of features is deployed in NDA projection space. The experimental data (mammograms) is analyzed under these settings. The mammographic data is consisted of two types of images, Craniocaudel (CC) and Medioletral Oblique (MLO) view images. Unlike to other researchers in this work both types of images are considered in separate sections. As the experimental data (mammograms) has fine and micro-texture, so, initially abnormal regions in CC view images, marked by radiologists, are tried to be analyzed on the basis of combined set of features (discussed above for the case of test data), extracted from ROI (8x8) under above mentioned both normalization conditions. As NDA approach based on ANN classifier and a number of options are available on „B11‟ software to configure this classifier. Data analysis capability of selected features under different architectural settings of ANN on the basis number of neurons in input hidden layer and learning rate „η‟ in NDA projection space is tried. Then the classifier is trained and tested on the basis of architectural settings for which the best clustering is received, by splitting data in 70/30 ratio respectively. For ROI (8x8) we received testing accuracy of 91.18% when the classifier is configured with 2 neurons in hidden layer and learning rate is set at 0.15 when the features are extracted under μ±3σ normalization condition. For same of size of ROI when features are extracted under 1-99% conditions, the best testing accuracy of 88.44% is obtained for same architectural settings (2 neurons and η=0.15). As the performance of the system for ROI (8x8) is not satisfactory, so, we tried to classify same data by extracting features from ROIs (16x16) under the both normalization approaches. Following the same procedural steps we received an accuracy of 92.56% for testing phase, when the classifier is configured with 2 neurons in hidden layer at learning rate 0.20 and the features are extracted under 1-99% normalization. We received excellent classifier testing result with an accuracy of 97.55% when the classifier is configured with 3 neurons in hidden layer at learning rate 0.15 and the features are extracted by applying μ±3σ approach. For MLO view images we obtained a testing accuracy of 84.41%, when the classifier is configured with 5 neurons in hidden layer with learning rate is set at 0.22 and the data is normalized by μ±3σ approach.
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اختری بیگم [اہلیہ مولانا سعید احمد اکبر آبادی]

[اہلیہ،مولانا سعیداحمد اکبرآبادی]
میری اہلیہ!اختری بیگم کے انتقال پرملال پرجو دو ماہ کی شدید علالت کے بعد ۳۰ / شعبان المعظم مطابق ۱۴/جولائی کوعصر اورمغرب کے درمیان ہوا۔جن دوستوں، عزیزوں نے برصغیر ہندوپاک اوربیرونی ممالک سے تعزیت کے خطوط و ٹیلگرام بھیجے ہیں اورہندوستان وپاکستان کے جن اخبارات نے تعزیتی نوٹ کے ساتھ اس خبر کوشائع کیاہے اورجن اداروں نے اپنے یہاں اجتماعی ایصال ثواب کااہتمام کیا ہے ان سب کی محبت وہمدردی کاتہہ دل سے نہایت شکرگذار ہوں اوردعاکرتا ہوں جزاھم اﷲ عنی جزاء خیرا۔
ساتھ ہی معذرت اس کی کرنی ہے کہ اس حادثہ نے ذہن وقلم کوجیسے مفلوج کردیاہے، چنانچہ برہان کے زیرنظر شمارہ کے لیے جب نظرات بھی نہیں جاسکے تواپنے ناتمام مضامین کے فائل سے ایک مضمون نکال کر بھرت پورا کر دیا ہے ، اس لیے قارئین کلکتہ کے سفرنامہ اورتبصروں کے لیے معذور تصور فرمائیں۔
[سعید اکبر آبادی، ۷/اگست۱۹۸۰ء]

 

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What Have the Teachers Learned? the Impact of Social Studies Vt Program on Selected Government School Teachers

This exploratory study presents the impact of Social studies visiting teacher (VT) program at IED on government school teachers' learning (views, attitude) and their practices in order to identify some key features of individual professional development efforts. The fieldwork for the study was done in four government schools in Karachi Pakistan with four Social Studies VTs (female) who have done VT course in 1996. The study focused on trying to understand what the teachers were taught in the VT program, what they learned and how it influenced their practices. The data for study was collected from VT, head, VT's colleague, course instructor and DEO through observation, interviews, discussions, documents and some activities (ideal lesson plan & teaching, situations). The major findings of the study were that Social Studies VT program has had some influence on VTs' attitude towards Social Studies and students which has become more positive. VTs have begun to consider Social Studies as more important, useful and an interesting subject, and students as a main key in teaching learning process. The program has had some impact on teachers' person. They have become more confident, polite, and tolerant and it has removed their fear of English language. This program has impacted on VTs' knowledge about skills and strategies that could be useful in teaching Social Studies or any subject. They specifically mentioned questioning skills, thinking skills, social skills and map skills, co-operative learning, peer coaching, lesson planning, and assessment. They have some partial understanding and misconceptions. VTs seems to have had very little influence on their practice. The nature of the VT program's impact on teachers has been explained in the study with reference to three factors: program factors, school factors and individual's factors. These factors act as filters between what the VTs are taught, what they learned and the extent to which they integrate their learning with their practice. The conclusion of the study is that teachers learned from VT program, but these factors determined what they would do? The implication of the study with recommendations are presented at the end of the paper.