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Home > Mutation and Expression Study of P21 and C-Myc Genes in Different Tumors

Mutation and Expression Study of P21 and C-Myc Genes in Different Tumors

Thesis Info

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Author

Manzoor, Saba

Program

PhD

Institute

University of Veterinary and Animal Sciences

City

Lahore

Province

Punjab

Country

Pakistan

Thesis Completing Year

2018

Thesis Completion Status

Completed

Subject

Molecular Biology

Language

English

Link

http://prr.hec.gov.pk/jspui/bitstream/123456789/11145/1/Saba%20Manzoor_Molecular%20Bio%20%26%20Biotech_2018_UVAS_PRR.pdf

Added

2021-02-17 19:49:13

Modified

2024-03-24 20:25:49

ARI ID

1676726738531

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Companion animals such as dogs are considered the best preclinical model for cancer and many other complex human diseases.Many features make the dog an attractive model for human cancer biology research. Firstly, the great genetic homology between the human and dog genome as compared to other animals. Secondly, dogs live in the same environment and share the similar risk factors or disease characteristics with humans. Dogs and cats are the most beloved creatures among the pet species. Therefore, animal passionate are more anxious about their companion animal''s health and husbandry techniques. The cancer incidence rate is increasing due to less rigorous managerial efforts, fewer animal health care facilities and economic constraints. The first part of the study was conducted at PG Lab, IBBT UVAS Lahore Pakistan, Forty three canines and twelve feline tumor and normal samples were collected from Pet Center UVAS from 2012 to 2015. The genomic DNA was extracted by using the Qiagen DNA extraction kit and specific set of primers were designed for the amplification of p21 and C-MYC gene. The amplified products were cleaned and sequenced for the detection of SNP/mutation. To determine the differential expression of p21 and C-MYC gene, total RNA was extracted and converted into cDNA using the Thermo Scientific RNA purification kit and cDNA synthesis kit respectively. Real time q-PCR ABI-7500 was used and a TaqMan primer probe for the studied genes and GAPDH housekeeping gene were specifically designed to detect and target the gene sequence. Exon 2 and exon 3 of both genes were sequenced but no polymorphism was detected in available samples. However, the expression of p21 gene was increased in 53% and 38% of all the studied tumors in canine and feline respectively, out of which 75% in canine mammary adenocarcinoma, 50% in canine OSCC, 33% in canine peri-anal adenocarcinoma, 60 % in canine mast cell tumors and 40% in canine soft tissue sarcomas, 40 % in feline mammary adenocarcinoma and 33 % in feline soft tissue sarcoma. . Similarly, C-MYC gene expression was increased in 80% and 75 % of all the studied tumors in canine and feline respectively, out of which 62% in canine mammary adenocarcinoma, 60 % in feline mammary adenocarcinoma, 75% in canine oral squamous cell carcinoma, 66 % in canine peri-anal adenocarcinoma, 80 % in canine mast cell tumors and 100% in canine and feline soft tissue sarcoma samples. The second part of the study was conduct at Veterinary Medicine Lab, University of Cambridge UK, Twelve canine soft tissue sarcomas were collected from Queens Veterinary School, University of Cambridge and thirteen soft tissue sarcomas sample from UVAS Lahore Pakistan for the expression profiling of microRNAs (miR-9, miR-23a, miR-92a, miR-125b, miR-451, miR-499) in correlation with structural genes (MIF, MDR, CDKN1A, C-MYC). MicroRNA expression experiments were performed using Qiagen Rotter Gene 6000 RT-qPCR and SYBER Green chemistry. The HPRT housekeeping gene, three SNORDS & RUN6 were used to normalize the structural genes and microRNs respectively. Expression data was analyzed by the Genepattern software. miR- 9a, miR- 92a, miR-499a showed the high expression while miR-23a, miR-125b and miR-451a showed low expression. Further more significant positive and negative correlations were observed among the genes investigated. Similarly, the above methodology was used on twenty human oral dysplasia and OSSC samples to determine the differential microRNA expression of 15 microRNAs (17-92 cluster family of microRNA, miR-21a, miR106b, miR-125a, miR-145, mir146a, miR146b, miR-182, miR451 and miR-let7a), Deregulation of microRNAs wasmainly observed in 17-92 cluster family (miR-17a. miR-18a, miR-19a. miR-19b, miR-20a, miR-92a) in oral squamous cell carcinoma when compared to oral dysplasia. Significant positive and negative correlations were also observed among the microRNAs. In conclusion, p21 and C-MYC showed an altered expression but no polymorphism was detected in the limited canine and feline tumor samples analyzed in this study, suggesting the need of more tumors samples to better understand the gene role in specific tumors pathogenesis Moreover, the panel of miRNAs used for STS and human OSCC, may be a useful addition to available data and helpful for a better understanding of tumor biology.
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۱-سور ةالمائدہ میں ارشادِ باری تعالیٰ ہے:

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The Third Party Involvement in Resolving River Water Disputes between Pakistan and India

Water and related issues are gaining importance in the present world politics. It is believed that water would be the source of some major future conflicts in many regions including South Asia. Water distribution between Pakistan and India has become a serious political issue since independence. The problem has its roots in the partition of the Indian Subcontinent in 1947. Although the issue was resolved amicably by the two states in 1960 and a treaty was signed, even then number of other issues developed after the treaty. One of the important aspects of the settlement route was the Indian refusal and Pakistan’s insistence on the presence and participation of any third neutral party. Despite the Indian policy of bilateralism on many regional issues, water disputes and resolution remained a classical example of multilateralism, where at least on four major occasions the settlements were reached with the involvement of a third neutral party.

The Study of Nanofluid Flows and its Mathematical Analysis With Applications

This thesis is regarding the development of mathematical flow models and analytical techniques for Newtonian and nan-Newtonian nanofluids containing different nanoparticles on stretching sheets and thin film flows on stretching cylinder and starching disc. For stretching sheet, a mathematical model of MHD three-dimension rotating flow of nanofluids is analyzed. SWCNTs are utilized as nano-sized materials while water is used as a based fluid. In this study the heat exchange phenomena deliberated subject to thermal radiation, Brownian motion and thermophoresis. Now for horizontal stretching cylinder, a mathematical formulation of thin film of 2 3 2 Al O H O g − and 2 3 2 6 2 Al O C H O g − nanoliquids is considered. The effect of effective Prandtl number, viscosity and thermal conductivity is discussed. For a starching disc of same problem, an unsteady thin film flow of 2 3 2 Al O H O g − and 2 3 2 6 2 Al O C H O g − nanoliquids is developed. Similarly, another problem of Darcy Forchheimer 2D thin film flow of nanofluids through unsteady stretchable sheets is developed. In this analysis water base SWCNTs are accounted as a nanoparticle. The transformation of nonlinear PDEs arising in these problems into strong ODEs is formed through appropriate variables. HAM techniques have been proposed to solve these problems while the solution of problem three are carried out by using OHAM scheme. In addition, in all these problems the effect of some model flow parameters on velocity and heat are calculated and studied through graphs. The certain physical factors of these problems skin friction coefficient (surface drag force) and Nusselt number (rate of heat transfer) are derived and present through tables.